miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33811_oar-mir-329b:mirbase
Length = 124
Score = 165 bits (83), Expect = 6e-42
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 1 tggtacctgaagagaggttttctgggtttctgtttctttaatgaggatgaaacacacctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29 tggtacctgaagagaggttttctgggtttctgtttctttaatgaggatgaaacacacctg 88
Query: 61 gttaacctcttttccagtatcaa 83
|||||||||||||||||||||||
Sbjct: 89 gttaacctcttttccagtatcaa 111
>33812_oar-mir-329b:mirbase
Length = 124
Score = 165 bits (83), Expect = 6e-42
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 1 tggtacctgaagagaggttttctgggtttctgtttctttaatgaggatgaaacacacctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29 tggtacctgaagagaggttttctgggtttctgtttctttaatgaggatgaaacacacctg 88
Query: 61 gttaacctcttttccagtatcaa 83
|||||||||||||||||||||||
Sbjct: 89 gttaacctcttttccagtatcaa 111
>26801_cfa-mir-329b:mirbase
Length = 80
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 2 ggtacctgaagagaggttttctgggtttctgtttctttaatgaggatgaaacacacctgg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtacctgaagagaggttttctgggtttctgtttctttaatgaggatgaaacacacctgg 60
Query: 62 ttaacctcttttccagtatc 81
||||||||||||||||||||
Sbjct: 61 ttaacctcttttccagtatc 80
>30946_ppy-mir-329-1:mirbase
Length = 80
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 2 ggtacctgaagagaggttttctgggtttctgtttctttaatgaggatgaaacacacctgg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtacctgaagagaggttttctgggtttctgtttctttaatgaggatgaaacacacctgg 60
Query: 62 ttaacctcttttccagtatc 81
||||||||||||||||||||
Sbjct: 61 ttaacctcttttccagtatc 80
>27841_mml-mir-329-1:mirbase
Length = 84
Score = 157 bits (79), Expect = 1e-39
Identities = 82/83 (98%)
Strand = Plus / Plus
Query: 1 tggtacctgaagagaggttttctgggtttctgtttctttaatgaggatgaaacacacctg 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tggtacctgaagggaggttttctgggtttctgtttctttaatgaggatgaaacacacctg 61
Query: 61 gttaacctcttttccagtatcaa 83
|||||||||||||||||||||||
Sbjct: 62 gttaacctcttttccagtatcaa 84
>30947_ppy-mir-329-2:mirbase
Length = 83
Score = 155 bits (78), Expect = 6e-39
Identities = 81/82 (98%)
Strand = Plus / Plus
Query: 1 tggtacctgaagagaggttttctgggtttctgtttctttaatgaggatgaaacacacctg 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 2 tggtacctgaagagaggttttctgggtttctgtttctttattgaggatgaaacacacctg 61
Query: 61 gttaacctcttttccagtatca 82
||||||||||||||||||||||
Sbjct: 62 gttaacctcttttccagtatca 83
>28578_hsa-mir-329-1:mirbase
Length = 80
Score = 151 bits (76), Expect = 9e-38
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 2 ggtacctgaagagaggttttctgggtttctgtttctttaatgaggatgaaacacacctgg 61
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 ggtacctgaagagaggttttctgggtttctgtttctttaatgaggacgaaacacacctgg 60
Query: 62 ttaacctcttttccagtatc 81
||||||||||||||||||||
Sbjct: 61 ttaacctcttttccagtatc 80
>28579_hsa-mir-329-2:mirbase
Length = 84
Score = 149 bits (75), Expect = 4e-37
Identities = 81/83 (97%)
Strand = Plus / Plus
Query: 1 tggtacctgaagagaggttttctgggtttctgtttctttaatgaggatgaaacacacctg 60
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 2 tggtacctgaagagaggttttctgggtttctgtttctttattgaggacgaaacacacctg 61
Query: 61 gttaacctcttttccagtatcaa 83
|||||||||||||||||||||||
Sbjct: 62 gttaacctcttttccagtatcaa 84
>30328_ptr-mir-329-1:mirbase
Length = 79
Score = 149 bits (75), Expect = 4e-37
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 3 gtacctgaagagaggttttctgggtttctgtttctttaatgaggatgaaacacacctggt 62
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 gtacctgaagagaggttttctgggtttctgtttctttaatgaggacgaaacacacctggt 60
Query: 63 taacctcttttccagtatc 81
|||||||||||||||||||
Sbjct: 61 taacctcttttccagtatc 79
>30329_ptr-mir-329-2:mirbase
Length = 79
Score = 149 bits (75), Expect = 4e-37
Identities = 78/79 (98%)
Strand = Plus / Plus
Query: 3 gtacctgaagagaggttttctgggtttctgtttctttaatgaggatgaaacacacctggt 62
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 gtacctgaagagaggttttctgggtttctgtttctttattgaggatgaaacacacctggt 60
Query: 63 taacctcttttccagtatc 81
|||||||||||||||||||
Sbjct: 61 taacctcttttccagtatc 79
>27125_eca-mir-329:mirbase
Length = 98
Score = 147 bits (74), Expect = 1e-36
Identities = 80/82 (97%)
Strand = Plus / Plus
Query: 1 tggtacctgaagagaggttttctgggtttctgtttctttaatgaggatgaaacacacctg 60
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 12 tggtacctgaagagaggttttctgggtttctgtttctttaatgaagatgaaacacaccta 71
Query: 61 gttaacctcttttccagtatca 82
||||||||||||||||||||||
Sbjct: 72 gttaacctcttttccagtatca 93
>27842_mml-mir-329-2:mirbase
Length = 80
Score = 135 bits (68), Expect = 5e-33
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 2 ggtacctgaagagaggttttctgggtttctgtttctttaatgaggatgaaacacacctgg 61
||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 1 ggtacctgaagggaggttttctgggtctctgtttctttactgaggatgaaacacacctgg 60
Query: 62 ttaacctcttttccagtatc 81
||||||||||||||||||||
Sbjct: 61 ttaacctcttttccagtatc 80
>33321_bta-mir-329a:mirbase
Length = 83
Score = 115 bits (58), Expect = 5e-27
Identities = 76/82 (92%)
Strand = Plus / Plus
Query: 1 tggtacctgaagagaggttttctgggtttctgtttctttaatgaggatgaaacacacctg 60
|||||| ||| |||||||||||| ||| ||||||||||| ||||||||||||||||||||
Sbjct: 2 tggtacttgaggagaggttttctaggtctctgtttctttcatgaggatgaaacacacctg 61
Query: 61 gttaacctcttttccagtatca 82
|||||||| |||||||||||||
Sbjct: 62 gttaaccttttttccagtatca 83
>33809_oar-mir-329a:mirbase
Length = 104
Score = 107 bits (54), Expect = 1e-24
Identities = 75/82 (91%)
Strand = Plus / Plus
Query: 1 tggtacctgaagagaggttttctgggtttctgtttctttaatgaggatgaaacacacctg 60
|||||| ||| |||||||||||| ||| || |||||||| ||||||||||||||||||||
Sbjct: 10 tggtacttgaggagaggttttctaggtctccgtttctttcatgaggatgaaacacacctg 69
Query: 61 gttaacctcttttccagtatca 82
|||||||| |||||||||||||
Sbjct: 70 gttaaccttttttccagtatca 91
>33810_oar-mir-329a:mirbase
Length = 104
Score = 107 bits (54), Expect = 1e-24
Identities = 75/82 (91%)
Strand = Plus / Plus
Query: 1 tggtacctgaagagaggttttctgggtttctgtttctttaatgaggatgaaacacacctg 60
|||||| ||| |||||||||||| ||| || |||||||| ||||||||||||||||||||
Sbjct: 10 tggtacttgaggagaggttttctaggtctccgtttctttcatgaggatgaaacacacctg 69
Query: 61 gttaacctcttttccagtatca 82
|||||||| |||||||||||||
Sbjct: 70 gttaaccttttttccagtatca 91
>26800_cfa-mir-329a:mirbase
Length = 60
Score = 95.6 bits (48), Expect = 5e-21
Identities = 57/60 (95%)
Strand = Plus / Plus
Query: 13 agaggttttctgggtttctgtttctttaatgaggatgaaacacacctggttaacctcttt 72
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 1 agaggttttctgggtttctgtttctttcatgaggatgaaacacacccagttaacctcttt 60
>31996_mmu-mir-329:mirbase
Length = 97
Score = 93.7 bits (47), Expect = 2e-20
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 1 tggtacctgaagagaggttttctgggtttctgtttctttaatgaggatgaaacacacctg 60
||||||| ||||||||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct: 11 tggtaccggaagagaggttttctgggtctctgtttctttgatgagaatgaaacacaccca 70
Query: 61 gttaacctcttttccagtatcaa 83
| |||||| |||| |||||||||
Sbjct: 71 gctaacctttttttcagtatcaa 93
>32850_rno-mir-329:mirbase
Length = 97
Score = 93.7 bits (47), Expect = 2e-20
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 1 tggtacctgaagagaggttttctgggtttctgtttctttaatgaggatgaaacacacctg 60
||||||| ||||||||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct: 11 tggtaccggaagagaggttttctgggtctctgtttctttgatgagaatgaaacacaccca 70
Query: 61 gttaacctcttttccagtatcaa 83
| |||||| |||| |||||||||
Sbjct: 71 gctaacctttttttcagtatcaa 93
