miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01044;mir-345;AAPE01429219.1/603-698 59463:Myotis lucifugus
(little brown bat)
Length = 96
Score = 149 bits (75), Expect = 7e-36
Identities = 87/91 (95%)
Strand = Plus / Plus
Query: 1 acccaaacccaggtctgctgactcctagtccagtgcttgtgatggctggtgggccctgaa 60
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1 acccaaacccaggtctgcggactcctagtccagtgcttgtgatggctggtgggccctgca 60
Query: 61 ctaggggtctggaggcctgggtttgaatatc 91
||||||||||||||||||||| ||||||||
Sbjct: 61 ttaggggtctggaggcctgggtgtgaatatc 91
>RF01044;mir-345;AAGU02348671.1/3072-3167 9785:Loxodonta africana
(African savanna elephant)
Length = 96
Score = 131 bits (66), Expect = 2e-30
Identities = 81/86 (94%)
Strand = Plus / Plus
Query: 6 aacccaggtctgctgactcctagtccagtgcttgtgatggctggtgggccctgaactagg 65
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 6 aacccaggtctgctgactcctagtccagtgcttgtgatggccattgggccctgaactagg 65
Query: 66 ggtctggaggcctgggtttgaatatc 91
|| |||||||||||||||||| ||||
Sbjct: 66 ggcctggaggcctgggtttgattatc 91
>RF01044;mir-345;AAYZ01540228.1/2113-2017 9978:Ochotona princeps
(American pika)
Length = 97
Score = 127 bits (64), Expect = 3e-29
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 8 cccaggtctgctgactcctagtccagtgcttgtgatggctggtgggccctgaactagggg 67
||||||||||||||||||| |||||||||| | |||||||| ||||||||||||| ||||
Sbjct: 9 cccaggtctgctgactcctcgtccagtgctcgagatggctgctgggccctgaactggggg 68
Query: 68 tctggaggcctgggtttgaatatc 91
||||||||||||||||||||||||
Sbjct: 69 tctggaggcctgggtttgaatatc 92
>RF01044;mir-345;ABRO01389073.1/865-964 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 100
Score = 115 bits (58), Expect = 1e-25
Identities = 82/89 (92%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 1 acccaaacccaggtctgctgactcctagtccagtgcttgtg--atggctggtgggccctg 58
||||||||||||| ||||||||||||||||||||||| ||| |||||||| ||||||||
Sbjct: 1 acccaaacccagggctgctgactcctagtccagtgctcgtgctatggctggggggccctg 60
Query: 59 aactaggggtctggaggcctgggtttgaa 87
| |||||||||||||||||||| ||||||
Sbjct: 61 agctaggggtctggaggcctggctttgaa 89
>RF01044;mir-345;AC193024.5/98698-98794 9544:Macaca mulatta
(rhesus monkey)
Length = 97
Score = 113 bits (57), Expect = 4e-25
Identities = 75/81 (92%)
Strand = Plus / Plus
Query: 11 aggtctgctgactcctagtccagtgcttgtgatggctggtgggccctgaactaggggtct 70
||||| |||||||||||||| || ||| ||| ||||||||||||||||||| ||||||||
Sbjct: 12 aggtcggctgactcctagtcaagggctcgtggtggctggtgggccctgaacgaggggtct 71
Query: 71 ggaggcctgggtttgaatatc 91
|||||||||||||||||||||
Sbjct: 72 ggaggcctgggtttgaatatc 92
>RF01044;mir-345;AC152061.6/175970-176065 10090:Mus musculus
(house mouse)
Length = 96
Score = 107 bits (54), Expect = 2e-23
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 9 ccaggtctgctgactcctagtccagtgcttgtgatggctggtgggccctgaactaggggt 68
||||| |||||||| |||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 9 ccaggcctgctgacccctagtccagtgcttgtggtggctactgggccctgaactaggggt 68
Query: 69 ctggaggcctgggtttga 86
|||||| |||||||||||
Sbjct: 69 ctggagacctgggtttga 86
>RF01044;mir-345;AAKN02051921.1/6097-6192 10141:Cavia porcellus
(domestic guinea pig)
Length = 96
Score = 103 bits (52), Expect = 4e-22
Identities = 79/88 (89%)
Strand = Plus / Plus
Query: 1 acccaaacccaggtctgctgactcctagtccagtgcttgtgatggctggtgggccctgaa 60
|||||| |||||| ||||||||||| ||||||||||| ||||| | | ||||||||||
Sbjct: 1 acccaaccccagggctgctgactcccagtccagtgctcgtgatcccagccgggccctgaa 60
Query: 61 ctaggggtctggaggcctgggtttgaat 88
||||||||||||||||||||||||||||
Sbjct: 61 ctaggggtctggaggcctgggtttgaat 88
>RF01044;mir-345;AALT01091699.1/386-481 42254:Sorex araneus
(European shrew)
Length = 96
Score = 99.6 bits (50), Expect = 6e-21
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 1 acccaaacccaggtctgctgactcctagtccagtgcttgtgatggctggtgggccctgaa 60
||||||||||||| | |||||||| |||||||||||| |||| ||||| |||||||||||
Sbjct: 1 acccaaacccaggccggctgactcttagtccagtgctcgtgaaggctgctgggccctgaa 60
Query: 61 ctaggggtctggaggcctgggtttga 86
|| ||||||||||||||||| ||||
Sbjct: 61 ctgagggtctggaggcctgggcttga 86
>RF01044;mir-345;ABRQ01086688.1/67-160 9813:Procavia capensis
(cape rock hyrax)
Length = 94
Score = 89.7 bits (45), Expect = 6e-18
Identities = 80/89 (89%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 1 acccaaacccaggtctgctgactcctagtccagtgcttgtgatggctggtgggccctgaa 60
|||||||| |||||| ||||||||||||||||||||| |||||||| |||| ||||||
Sbjct: 1 acccaaactcaggtcagctgactcctagtccagtgctcgtgatggccattggg-cctgaa 59
Query: 61 ctaggggtctggaggcctgggtttgaata 89
||||||||||||||| || ||||||||||
Sbjct: 60 ctaggggtctggagg-ctaggtttgaata 87
>RF01044;mir-345;AAIY01055903.1/172-268 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 97
Score = 87.7 bits (44), Expect = 2e-17
Identities = 74/84 (88%)
Strand = Plus / Plus
Query: 8 cccaggtctgctgactcctagtccagtgcttgtgatggctggtgggccctgaactagggg 67
|||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 8 cccaggcctgctgactcctagtccagtgctcgtgatgggcatagggccctgaactagggg 67
Query: 68 tctggaggcctgggtttgaatatc 91
|||||||| ||| | |||||||||
Sbjct: 68 tctggaggtctgcgcttgaatatc 91
>RF00005;tRNA;AAPN01047639.1/1830-1901 :
Length = 72
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 6 aacccaggtctgctgactcctagtccagtgc 36
|||||||||| |||||||||||||||||||
Sbjct: 54 aacccaggtcctctgactcctagtccagtgc 24
>RF01044;mir-345;AAPN01000341.1/13175-13287 9258:Ornithorhynchus
anatinus (platypus)
Length = 113
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 5 aaacccaggtctgctgactcctagtccagt 34
||||||||||||||||||||| || |||||
Sbjct: 5 aaacccaggtctgctgactcccaggccagt 34
