miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01903;mir-500;ABRR01444762.1/1337-1426 30538:Lama pacos
(alpaca)
Length = 90
Score = 105 bits (53), Expect = 6e-23
Identities = 62/65 (95%)
Strand = Plus / Plus
Query: 1 ctcgaatccttggaacctaggtgtgagtgctgttctagtgcaacacacctattcaaggat 60
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 15 ctcgaatccttggaacctaggtgtgagtgccgttctgatgcaacacacctattcaaggat 74
Query: 61 tcaaa 65
|||||
Sbjct: 75 tcaaa 79
>RF01903;mir-500;AAGW01126437.1/6267-6356 9986:Oryctolagus
cuniculus (rabbit)
Length = 90
Score = 97.6 bits (49), Expect = 2e-20
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 5 aatccttggaacctaggtgtgagtgctgttctagtgcaacacacctattcaaggattcaa 64
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 19 aatccttggcacctaggtgtgagtgctgtttcagtgcaacacacctattcaaggattcaa 78
Query: 65 a 65
|
Sbjct: 79 a 79
>RF01903;mir-500;AANN01738471.1/11-100 9365:Erinaceus europaeus
(western European hedgehog)
Length = 90
Score = 77.8 bits (39), Expect = 1e-14
Identities = 59/63 (93%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 1 ctcgaatccttggaacctaggtgtgagtgctgttctagtgcaacaca-cctattcaagga 59
|||||||||| |||||||||||||||||||| ||| ||||||||||| ||||||||||||
Sbjct: 15 ctcgaatcct-ggaacctaggtgtgagtgctattccagtgcaacacaccctattcaagga 73
Query: 60 ttc 62
|||
Sbjct: 74 ttc 76
>RF01903;mir-500;ABRQ01341134.1/4896-4985 9813:Procavia capensis
(cape rock hyrax)
Length = 90
Score = 67.9 bits (34), Expect = 1e-11
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 5 aatccttggaacctaggtgtgagtgctgttctagtgcaacacacctattcaaggattc 62
||||||||||||||||||||||||||| | |||||||||||||| || ||||||||
Sbjct: 19 aatccttggaacctaggtgtgagtgctacttcagtgcaacacacctgttgaaggattc 76
