miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01898;mir-363;ABQF01018395.1/1892-1979 59729:Taeniopygia
guttata
Length = 88
Score = 121 bits (61), Expect = 1e-27
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 1 tgttgtcgggtggatcacgatgcaattttgattagtataataggagaaaaattgcacggt 60
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 9 tgttgtcgggtggatcacgatgcaattttgattagtttagtaggagaaaaattgcacggt 68
Query: 61 atccatctg 69
|||||||||
Sbjct: 69 atccatctg 77
>RF01898;mir-363;AAHY01210291.1/5295-5208 10090:Mus musculus
(house mouse)
Length = 88
Score = 81.8 bits (41), Expect = 1e-15
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 9 ggtggatcacgatgcaattttgattagtataataggagaaaaattgcacggtatccatct 68
|||||| ||||||||||||||| || || ||||||||| |||||||||||||||||||||
Sbjct: 17 ggtggaacacgatgcaattttggttggtgtaataggaggaaaattgcacggtatccatct 76
Query: 69 g 69
|
Sbjct: 77 g 77
>RF01898;mir-363;AAIY01805305.1/474-387 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 88
Score = 58.0 bits (29), Expect = 2e-08
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 16 cacgatgcaattttgattagtataataggagaaaaattgcacggtatccatct 68
||||||||||||||||||||| ||||||||||||| |||||||| |||||
Sbjct: 24 cacgatgcaattttgattagtcaggtaggagaaaaatttcacggtattcatct 76
>RF01898;mir-363;BX511227.7/24887-24794 7955:Danio rerio
(zebrafish)
Length = 94
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 aaaaattgcacggtatccatctg 69
|||||||||||||||||||||||
Sbjct: 61 aaaaattgcacggtatccatctg 83
