miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00840;mir-374;AAGU02466059.1/2740-2670 9785:Loxodonta africana
(African savanna elephant)
Length = 71
Score = 123 bits (62), Expect = 4e-28
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 13 ctcggatggatataatacaacctgctaagtgtcctagcacttatcaggttgtattatcat 72
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2 ctcggatgaatataatacaacctgctaagtgtcctagcacttatcaggctgtattatcat 61
Query: 73 tgtccgtgtc 82
||||||||||
Sbjct: 62 tgtccgtgtc 71
>RF00840;mir-374;AJ421479.1/16189-16259 10090:Mus musculus (house
mouse)
Length = 71
Score = 109 bits (55), Expect = 6e-24
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 12 actcggatggatataatacaacctgctaagtgtcctagcacttatcaggttgtattatca 71
|||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 1 actcgggtggatataatacaacctgctaagtgttctagcacttagcaggttgtattatca 60
Query: 72 ttgtccg 78
|||||||
Sbjct: 61 ttgtccg 67
Score = 44.1 bits (22), Expect = 3e-04
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 24 ataatacaacctgctaagtgtcctagcacttatcaggttgtattat 69
|||||||||||||||||||| | |||||| |||||||||||||
Sbjct: 58 ataatacaacctgctaagtgctagaacacttagcaggttgtattat 13
>RF00840;mir-374;AALT01656114.1/3449-3379 42254:Sorex araneus
(European shrew)
Length = 71
Score = 97.6 bits (49), Expect = 2e-20
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 13 ctcggatggatataatacaacctgctaagtgtcctagcacttatcaggttgtattatcat 72
|||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||| ||
Sbjct: 2 ctcggatggatataatacaacctgctaagtgtactaccacttaccaggttgtattattat 61
Query: 73 tgtccgtgt 81
||||||||
Sbjct: 62 cgtccgtgt 70
>RF00840;mir-374;AAPE01385052.1/350-280 59463:Myotis lucifugus
(little brown bat)
Length = 71
Score = 71.9 bits (36), Expect = 1e-12
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 12 actcggatggatataatacaacctgctaagtgtcctagcacttatcaggttgtattatca 71
|||| |||| ||||||||||||||| |||||| || |||||||| ||||||||| |||||
Sbjct: 1 actcagatgtatataatacaacctggtaagtggcccagcacttaccaggttgtactatca 60
Query: 72 ttgt 75
||||
Sbjct: 61 ttgt 64
>RF00840;mir-374;AAGV020234407.1/12295-12225 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 71
Score = 69.9 bits (35), Expect = 6e-12
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 12 actcggatggatataatacaacctgctaagtgtcctagcacttatcaggttgtattatca 71
|||| |||||||||||||||||||| |||||||||||||| | ||| ||||||| |||
Sbjct: 1 actcagatggatataatacaacctgttaagtgtcctagcatgaaccagattgtattgtca 60
Query: 72 ttgtccgtgtc 82
|||| ||||||
Sbjct: 61 ttgttcgtgtc 71
>RF00840;mir-374;AAGW01240856.1/838-768 9986:Oryctolagus cuniculus
(rabbit)
Length = 71
Score = 46.1 bits (23), Expect = 8e-05
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 23 tataatacaacctgctaagtgtcctagcacttatcaggttgtattatcattgtccgtgt 81
|||||||||||||| ||||||| |||||||| ||| ||||||| | |||||| ||||
Sbjct: 12 tataatacaacctgataagtgttacagcacttaccagattgtattgtaattgtctgtgt 70
