miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;EU549010.1/122-488 3702:Arabidopsis thaliana
(thale cress)
Length = 367
Score = 565 bits (285), Expect = e-160
Identities = 288/289 (99%)
Strand = Plus / Plus
Query: 29 ggtttttagaagctgaagctgccagcatgatctggtaatcgctacatacgacatacacac 88
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtttttagaagctgaagctgccagcatgatctggtaatcgctacatacgacatacacac 60
Query: 89 atcactaaacttctttataatttatgcacacacatacagctcttaatggccacaactcaa 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atcactaaacttctttataatttatgcacacacatacagctcttaatggccacaactcaa 120
Query: 149 agttataattagtgcatgatctctagttatttgactgcttttaatatatgtttatggatt 208
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agatataattagtgcatgatctctagttatttgactgcttttaatatatgtttatggatt 180
Query: 209 cacgcatgtgtgtgtatgtacataatttacatgcatgcactttgtgtatggtacacatca 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cacgcatgtgtgtgtatgtacataatttacatgcatgcactttgtgtatggtacacatca 240
Query: 269 atttgaacccgttcaaaattctgtttttattagtatatatatagatgta 317
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atttgaacccgttcaaaattctgtttttattagtatatatatagatgta 289
Score = 95.6 bits (48), Expect = 5e-19
Identities = 48/48 (100%)
Strand = Plus / Plus
Query: 348 ttatagatagtagtactaggtcatcctgcagcttcagtcactaaatca 395
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttatagatagtagtactaggtcatcctgcagcttcagtcactaaatca 367
>RF00640;MIR167_1;EU549031.1/122-508 3702:Arabidopsis thaliana
(thale cress)
Length = 387
Score = 204 bits (103), Expect = 7e-52
Identities = 122/127 (96%), Gaps = 1/127 (0%)
Strand = Plus / Plus
Query: 29 ggtttttagaagctgaagctgccagcatgatctggtaatcgctacatacgacatacacac 88
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 ggtttttagaagctgaagctgccagcatgatctggtaatcgctaca-acgacatacacac 59
Query: 89 atcactaaacttctttataatttatgcacacacatacagctcttaatggccacaactcaa 148
|||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 60 atcactaaacttatttataatttatgcacacacatacacttcttaatggccacacctcaa 119
Query: 149 agttata 155
|||||||
Sbjct: 120 agttata 126
Score = 202 bits (102), Expect = 3e-51
Identities = 144/156 (92%), Gaps = 9/156 (5%)
Strand = Plus / Plus
Query: 155 aattagtgcatgatctctagttatttgactgcttttaatatatgtttatggattcacgca 214
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 165 aattagtgcatgatctctagttctttgactgcttttaatatatgtttatggattcacgca 224
Query: 215 --tgtgtgtgtatgtacataatttacatgcatgcactttgtgtatggtacacatcaattt 272
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 225 tgtgtgtgtgtatgtacatagtttacatgcatgcactttgtgtatggtacacatcaatt- 283
Query: 273 gaacccgttc-aaaattctgtttttattagtatata 307
||||| ||||||||| |||||||||||||||
Sbjct: 284 -----cgttcaaaaattctggttttattagtatata 314
Score = 95.6 bits (48), Expect = 5e-19
Identities = 48/48 (100%)
Strand = Plus / Plus
Query: 348 ttatagatagtagtactaggtcatcctgcagcttcagtcactaaatca 395
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ttatagatagtagtactaggtcatcctgcagcttcagtcactaaatca 387
>RF00640;MIR167_1;EU549029.1/122-486 3702:Arabidopsis thaliana
(thale cress)
Length = 365
Score = 202 bits (102), Expect = 3e-51
Identities = 144/156 (92%), Gaps = 9/156 (5%)
Strand = Plus / Plus
Query: 155 aattagtgcatgatctctagttatttgactgcttttaatatatgtttatggattcacgca 214
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 143 aattagtgcatgatctctagttctttgactgcttttaatatatgtttatggattcacgca 202
Query: 215 --tgtgtgtgtatgtacataatttacatgcatgcactttgtgtatggtacacatcaattt 272
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 203 tgtgtgtgtgtatgtacatagtttacatgcatgcactttgtgtatggtacacatcaatt- 261
Query: 273 gaacccgttc-aaaattctgtttttattagtatata 307
||||| ||||||||| |||||||||||||||
Sbjct: 262 -----cgttcaaaaattctggttttattagtatata 292
Score = 161 bits (81), Expect = 1e-38
Identities = 91/93 (97%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 29 ggtttttagaagctgaagctgccagcatgatctggtaatcgctacatacgacatacacac 88
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1 ggtttttagaagctgaagctgccagcatgatctggtaatcgctaca-acgacatacacac 59
Query: 89 atcactaaacttctttataatttatgcacacac 121
|||||||||||| ||||||||||||||||||||
Sbjct: 60 atcactaaacttatttataatttatgcacacac 92
Score = 95.6 bits (48), Expect = 5e-19
Identities = 48/48 (100%)
Strand = Plus / Plus
Query: 348 ttatagatagtagtactaggtcatcctgcagcttcagtcactaaatca 395
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttatagatagtagtactaggtcatcctgcagcttcagtcactaaatca 365
>RF00640;MIR167_1;BABK01002345.1/2496-2649 34305:Lotus japonicus
Length = 154
Score = 54.0 bits (27), Expect = 2e-06
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 42 tgaagctgccagcatgatctggtaatc 68
|||||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggtaatc 40
>RF00640;MIR167_1;AARH01012195.1/26948-26514 3694:Populus
trichocarpa
Length = 435
Score = 52.0 bits (26), Expect = 7e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 42 tgaagctgccagcatgatctggtaat 67
||||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggtaat 39
>RF00640;MIR167_1;AC212802.1/77650-78085 3694:Populus trichocarpa
Length = 436
Score = 52.0 bits (26), Expect = 7e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 42 tgaagctgccagcatgatctggtaat 67
||||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggtaat 39
>RF00640;MIR167_1;AASG02013372.1/3243-2901 3988:Ricinus communis
(castor bean)
Length = 343
Score = 52.0 bits (26), Expect = 7e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 42 tgaagctgccagcatgatctggtaat 67
||||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggtaat 39
>RF00640;MIR167_1;AP003800.3/19613-19499 39947:Oryza sativa
Japonica Group
Length = 115
Score = 50.1 bits (25), Expect = 3e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 34 ttagaagctgaagctgccagcatgatctg 62
|||| ||||||||||||||||||||||||
Sbjct: 6 ttaggagctgaagctgccagcatgatctg 34
>RF00640;MIR167_1;AAAA02020690.1/41483-41278 39946:Oryza sativa
Indica Group
Length = 206
Score = 50.1 bits (25), Expect = 3e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 40 gctgaagctgccagcatgatctggt 64
|||||||||||||||||||||||||
Sbjct: 12 gctgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;ABXC01002259.1/3174-3066 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 48.1 bits (24), Expect = 1e-04
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 agctgaagctgccagcatgatctg 62
||||||||||||||||||||||||
Sbjct: 11 agctgaagctgccagcatgatctg 34
>RF00640;MIR167_1;ABXC01000844.1/72139-72006 4558:Sorghum bicolor
(sorghum)
Length = 134
Score = 48.1 bits (24), Expect = 1e-04
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 agctgaagctgccagcatgatctg 62
||||||||||||||||||||||||
Sbjct: 11 agctgaagctgccagcatgatctg 34
>RF00640;MIR167_1;AAAA02003942.1/33918-33790 39946:Oryza sativa
Indica Group
Length = 129
Score = 48.1 bits (24), Expect = 1e-04
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 agctgaagctgccagcatgatctg 62
||||||||||||||||||||||||
Sbjct: 11 agctgaagctgccagcatgatctg 34
>RF00640;MIR167_1;CAAP02000801.1/49293-49646 29760:Vitis vinifera
Length = 354
Score = 46.1 bits (23), Expect = 4e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 42 tgaagctgccagcatgatctggt 64
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;BT062276.1/99-327 4577:Zea mays
Length = 229
Score = 46.1 bits (23), Expect = 4e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 42 tgaagctgccagcatgatctggt 64
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;EU944277.1/110-337 4577:Zea mays
Length = 228
Score = 46.1 bits (23), Expect = 4e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 42 tgaagctgccagcatgatctggt 64
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;ABXC01000720.1/131669-131557 4558:Sorghum
bicolor (sorghum)
Length = 113
Score = 46.1 bits (23), Expect = 4e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 36 agaagctgaagctgccagcatgatctg 62
||||| |||||||||||||||||||||
Sbjct: 8 agaagatgaagctgccagcatgatctg 34
>RF00640;MIR167_1;ABXC01006864.1/41201-41318 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 46.1 bits (23), Expect = 4e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 42 tgaagctgccagcatgatctggt 64
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;AACV01003428.1/8526-8249 39947:Oryza sativa
Japonica Group
Length = 278
Score = 46.1 bits (23), Expect = 4e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 42 tgaagctgccagcatgatctggt 64
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
