miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRQ01054364.1/4611-4690 9813:Procavia capensis
          (cape rock hyrax)
          Length = 80

 Score =  159 bits (80), Expect = 7e-39
 Identities = 80/80 (100%)
 Strand = Plus / Plus

                                                                      
Query: 2  ggtacttggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacacg 61
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggtacttggagagatagtagaccgtatagcgtacgctttatctgtgacgtatgtaacacg 60

                              
Query: 62 gtccactaaccctcagtatc 81
          ||||||||||||||||||||
Sbjct: 61 gtccactaaccctcagtatc 80




>RF00641;mir-154;AAYZ01424895.1/367-448 9978:Ochotona princeps
          (American pika)
          Length = 82

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                              
Query: 46 tgacgtatgtaacacggtccactaaccctcagtatc 81
          |||| ||||||||| ||||||||||| |||||||||
Sbjct: 47 tgacctatgtaacatggtccactaactctcagtatc 82




>RF00641;mir-154;AAGU02503119.1/1083-1160 9785:Loxodonta africana
          (African savanna elephant)
          Length = 78

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                          
Query: 34 acgctttatctgtgacgtatgtaacacggtccactaaccctcagtatc 81
          ||||||||| | |||||| ||| ||  |||||||||||||||||||||
Sbjct: 31 acgctttatttatgacgtttgtgacctggtccactaaccctcagtatc 78




>RF00641;mir-154;ABRQ01054366.1/427-503 9813:Procavia capensis
          (cape rock hyrax)
          Length = 77

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                          
Query: 34 acgctttatctgtgacgtatgtaacacggtccactaaccctcagtatc 81
          ||||||||| | |||||| ||| ||  |||||||||||||||||||||
Sbjct: 30 acgctttatttatgacgtttgtgacctggtccactaaccctcagtatc 77




>RF00641;mir-154;ABRQ01054364.1/3334-3416 9813:Procavia capensis
          (cape rock hyrax)
          Length = 83

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                              
Query: 46 tgacgtatgtaacacggtccactaaccctcagtatc 81
          |||| ||||||||| ||||||||||| |||||||||
Sbjct: 48 tgacctatgtaacatggtccactaactctcagtatc 83