miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33868_oar-mir-543:mirbase
Length = 123
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 ggtgcttaaggagaagttgcccgtgtctttttcgctttatatgtgacgaaacattcgcgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29 ggtgcttaaggagaagttgcccgtgtctttttcgctttatatgtgacgaaacattcgcgg 88
Query: 61 tgcacttctttttcagtatc 80
||||||||||||||||||||
Sbjct: 89 tgcacttctttttcagtatc 108
>33869_oar-mir-543:mirbase
Length = 123
Score = 159 bits (80), Expect = 4e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 ggtgcttaaggagaagttgcccgtgtctttttcgctttatatgtgacgaaacattcgcgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29 ggtgcttaaggagaagttgcccgtgtctttttcgctttatatgtgacgaaacattcgcgg 88
Query: 61 tgcacttctttttcagtatc 80
||||||||||||||||||||
Sbjct: 89 tgcacttctttttcagtatc 108
>27993_mml-mir-543:mirbase
Length = 80
Score = 135 bits (68), Expect = 5e-33
Identities = 74/76 (97%)
Strand = Plus / Plus
Query: 5 cttaaggagaagttgcccgtgtctttttcgctttatatgtgacgaaacattcgcggtgca 64
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 5 cttaatgagaagttgcccgtgtctttttcgctttatttgtgacgaaacattcgcggtgca 64
Query: 65 cttctttttcagtatc 80
||||||||||||||||
Sbjct: 65 cttctttttcagtatc 80
>27229_eca-mir-543:mirbase
Length = 72
Score = 127 bits (64), Expect = 1e-30
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 5 cttaaggagaagttgcccgtgtctttttcgctttatatgtgacgaaacattcgcggtgca 64
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 1 cttaaggagaagttgcccgtgtttttttcgctttatttgtgacgaaacattcgcggtgca 60
Query: 65 cttctttttcag 76
||||||||||||
Sbjct: 61 cttctttttcag 72
>28791_hsa-mir-543:mirbase
Length = 78
Score = 127 bits (64), Expect = 1e-30
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 5 cttaaggagaagttgcccgtgtctttttcgctttatatgtgacgaaacattcgcggtgca 64
||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 3 cttaatgagaagttgcccgtgtttttttcgctttatttgtgacgaaacattcgcggtgca 62
Query: 65 cttctttttcagtatc 80
||||||||||||||||
Sbjct: 63 cttctttttcagtatc 78
>31130_ppy-mir-543:mirbase
Length = 78
Score = 127 bits (64), Expect = 1e-30
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 5 cttaaggagaagttgcccgtgtctttttcgctttatatgtgacgaaacattcgcggtgca 64
||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 3 cttaatgagaagttgcccgtgtttttttcgctttatttgtgacgaaacattcgcggtgca 62
Query: 65 cttctttttcagtatc 80
||||||||||||||||
Sbjct: 63 cttctttttcagtatc 78
>32954_rno-mir-543:mirbase
Length = 80
Score = 127 bits (64), Expect = 1e-30
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 1 ggtgcttaaggagaagttgcccgtgtctttttcgctttatatgtgacgaaacattcgcgg 60
||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 1 ggtgcttaatgagaagttgcccgcgtgtttttcgctttatatgtgacgaaacattcgcgg 60
Query: 61 tgcacttctttttcag 76
||||||||||||||||
Sbjct: 61 tgcacttctttttcag 76
>32208_mmu-mir-543:mirbase
Length = 76
Score = 123 bits (62), Expect = 2e-29
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 3 tgcttaaggagaagttgcccgtgtctttttcgctttatatgtgacgaaacattcgcggtg 62
||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcttaatgagaagttgcccgcgtgtttttcgctttatatgtgacgaaacattcgcggtg 60
Query: 63 cacttctttttcag 76
||||||||||||||
Sbjct: 61 cacttctttttcag 74
>30467_ptr-mir-543:mirbase
Length = 77
Score = 119 bits (60), Expect = 3e-28
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 5 cttaaggagaagttgcccgtgtctttttcgctttatatgtgacgaaacattcgcggtgca 64
||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 2 cttaatgagaagttgcccgtgtttttttcgctttatttgtgacgaaacattcgcggtgca 61
Query: 65 cttctttttcagtatc 80
|||||| |||||||||
Sbjct: 62 cttcttcttcagtatc 77
>26877_cfa-mir-543:mirbase
Length = 58
Score = 99.6 bits (50), Expect = 3e-22
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 13 gaagttgcccgtgtctttttcgctttatatgtgacgaaacattcgcggtgcacttctt 70
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 gaagttgcccgtgtttttttcgctttatttgtgacgaaacattcgcggtgcacttctt 58
>27935_mml-mir-495:mirbase
Length = 82
Score = 73.8 bits (37), Expect = 2e-14
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 12 agaagttgcccgtgtctttttcgctttatatgtgacgaaacattcgcggtgcacttcttt 71
||||||||||| ||| ||||||||||||||||||||||||| | |||||||||||||
Sbjct: 13 agaagttgcccatgttattttcgctttatatgtgacgaaacaaacatggtgcacttcttt 72
Query: 72 ttcagtatc 80
||| |||||
Sbjct: 73 ttcggtatc 81
>28686_hsa-mir-495:mirbase
Length = 82
Score = 73.8 bits (37), Expect = 2e-14
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 12 agaagttgcccgtgtctttttcgctttatatgtgacgaaacattcgcggtgcacttcttt 71
||||||||||| ||| ||||||||||||||||||||||||| | |||||||||||||
Sbjct: 13 agaagttgcccatgttattttcgctttatatgtgacgaaacaaacatggtgcacttcttt 72
Query: 72 ttcagtatc 80
||| |||||
Sbjct: 73 ttcggtatc 81
>30398_ptr-mir-495:mirbase
Length = 81
Score = 73.8 bits (37), Expect = 2e-14
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 12 agaagttgcccgtgtctttttcgctttatatgtgacgaaacattcgcggtgcacttcttt 71
||||||||||| ||| ||||||||||||||||||||||||| | |||||||||||||
Sbjct: 12 agaagttgcccatgttattttcgctttatatgtgacgaaacaaacatggtgcacttcttt 71
Query: 72 ttcagtatc 80
||| |||||
Sbjct: 72 ttcggtatc 80
>31034_ppy-mir-495:mirbase
Length = 79
Score = 73.8 bits (37), Expect = 2e-14
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 12 agaagttgcccgtgtctttttcgctttatatgtgacgaaacattcgcggtgcacttcttt 71
||||||||||| ||| ||||||||||||||||||||||||| | |||||||||||||
Sbjct: 10 agaagttgcccatgttattttcgctttatatgtgacgaaacaaacatggtgcacttcttt 69
Query: 72 ttcagtatc 80
||| |||||
Sbjct: 70 ttcggtatc 78
>27205_eca-mir-495:mirbase
Length = 82
Score = 65.9 bits (33), Expect = 4e-12
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 12 agaagttgcccgtgtctttttcgctttatatgtgacgaaacattcgcggtgcacttcttt 71
||||||||||| ||| ||||||||| ||||||||||||||| | |||||||||||||
Sbjct: 13 agaagttgcccatgttattttcgcttgatatgtgacgaaacaaacatggtgcacttcttt 72
Query: 72 ttcagtatc 80
||| |||||
Sbjct: 73 ttcggtatc 81
>26864_cfa-mir-495:mirbase
Length = 58
Score = 44.1 bits (22), Expect = 1e-05
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 13 gaagttgcccgtgtctttttcgctttatatgtgacgaaacattcgcggtgcacttctt 70
|||||||||||||| ||||||||| ||| ||| ||||||| | ||||||||||||
Sbjct: 1 gaagttgcccgtgttattttcgcttgatacgtgccgaaacaaacatggtgcacttctt 58
>32937_rno-mir-495:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 6e-05
Identities = 56/65 (86%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 12 agaagttgcccgtgtc-tttttcgcttt-atatgtgacgaaacattcgcggtgcacttct 69
||||||||||| ||| ||||||||||| || |||||||||||| | |||||||||||
Sbjct: 10 agaagttgcccatgttatttttcgcttttatttgtgacgaaacaaacatggtgcacttct 69
Query: 70 ttttc 74
|||||
Sbjct: 70 ttttc 74
>33400_bta-mir-495:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 6e-05
Identities = 52/61 (85%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 12 agaagttgcccgtgtctttttcgctttatatgtgacgaaacattcgcggtgcacttcttt 71
||||||||||| ||| |||||||| ||||||||||||||| | |||||||||||||
Sbjct: 13 agaagttgcccatgttcttttcgctg-atatgtgacgaaacaaacatggtgcacttcttt 71
Query: 72 t 72
|
Sbjct: 72 t 72
>33860_oar-mir-495:mirbase
Length = 126
Score = 38.2 bits (19), Expect = 9e-04
Identities = 52/63 (82%)
Strand = Plus / Plus
Query: 12 agaagttgcccgtgtctttttcgctttatatgtgacgaaacattcgcggtgcacttcttt 71
|||||| |||| ||| ||||||||| || |||| ||||||| | |||||||||||||
Sbjct: 42 agaagtcgcccatgttcttttcgcttgatttgtgtcgaaacaaacatggtgcacttcttt 101
Query: 72 ttc 74
|||
Sbjct: 102 ttc 104
>33861_oar-mir-495:mirbase
Length = 126
Score = 38.2 bits (19), Expect = 9e-04
Identities = 52/63 (82%)
Strand = Plus / Plus
Query: 12 agaagttgcccgtgtctttttcgctttatatgtgacgaaacattcgcggtgcacttcttt 71
|||||| |||| ||| ||||||||| || |||| ||||||| | |||||||||||||
Sbjct: 42 agaagtcgcccatgttcttttcgcttgatttgtgtcgaaacaaacatggtgcacttcttt 101
Query: 72 ttc 74
|||
Sbjct: 102 ttc 104
