miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00426;SCARNA15;ABDC01642996.1/97-188 30608:Microcebus murinus
(gray mouse lemur)
Length = 92
Score = 117 bits (59), Expect = 2e-26
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 1 aatgaaaaggtagatagaacaggtcttgtgtgcaaaatgaattcaagacctacttatcta 60
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 24 aatgaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctacttatcta 83
Query: 61 ccaacag 67
|||||||
Sbjct: 84 ccaacag 90
>RF00426;SCARNA15;ABDC01323625.1/886-758 30608:Microcebus murinus
(gray mouse lemur)
Length = 129
Score = 117 bits (59), Expect = 2e-26
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 1 aatgaaaaggtagatagaacaggtcttgtgtgcaaaatgaattcaagacctacttatcta 60
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 61 aatgaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctacttatcta 120
Query: 61 ccaacag 67
|||||||
Sbjct: 121 ccaacag 127
>RF00426;SCARNA15;ABDC01414620.1/1491-1629 30608:Microcebus murinus
(gray mouse lemur)
Length = 139
Score = 117 bits (59), Expect = 2e-26
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 1 aatgaaaaggtagatagaacaggtcttgtgtgcaaaatgaattcaagacctacttatcta 60
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 71 aatgaaaaggtagatagaacaggtcttgtttgcaaaataaattcaagacctacttatcta 130
Query: 61 ccaacag 67
|||||||
Sbjct: 131 ccaacag 137
>RF00426;SCARNA15;AAGV020357757.1/1133-1034 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 100
Score = 111 bits (56), Expect = 1e-24
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 2 atgaaaaggtagatagaacaggtcttgtgtgcaaaatgaattcaagacctacttatctac 61
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 33 atgaaaaggtagatagaacaggtcttgtttgcaaaatatattcaagacctacttatctac 92
Query: 62 caacagca 69
||||||||
Sbjct: 93 caacagca 100
>RF00426;SCARNA15;AAGU02340666.1/908-1033 9785:Loxodonta africana
(African savanna elephant)
Length = 126
Score = 107 bits (54), Expect = 2e-23
Identities = 63/66 (95%)
Strand = Plus / Plus
Query: 2 atgaaaaggtagatagaacaggtcttgtgtgcaaaatgaattcaagacctacttatctac 61
||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 59 atgaaaaggtagacagaacaggtcttgtttgcaaaataaattcaagacctacttatctac 118
Query: 62 caacag 67
||||||
Sbjct: 119 caacag 124
>RF00426;SCARNA15;AAGV020611566.1/33-113 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 81
Score = 97.6 bits (49), Expect = 2e-20
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 5 aaaaggtagatagaacaggtcttgtgtgcaaaatgaattcaagacctacttatctaccaa 64
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
Sbjct: 17 aaaaggtagatagaacaggtcttgtttgcaaaatatattcaagacctacttatctaccca 76
Query: 65 cagca 69
|||||
Sbjct: 77 cagca 81
>RF00426;SCARNA15;ABRT010960031.1/1022-896 9478:Tarsius syrichta
(Philippine tarsier)
Length = 127
Score = 97.6 bits (49), Expect = 2e-20
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 1 aatgaaaaggtagatagaacaggtcttgtgtgcaaaatgaattcaagacctacttatcta 60
||||||| | |||||||||||| |||||| |||||||| |||||||||||||||||||||
Sbjct: 59 aatgaaatgttagatagaacagatcttgtttgcaaaataaattcaagacctacttatcta 118
Query: 61 ccaacagca 69
|||||||||
Sbjct: 119 ccaacagca 127
>RF00426;SCARNA15;AAPE01262062.1/297-424 59463:Myotis lucifugus
(little brown bat)
Length = 128
Score = 93.7 bits (47), Expect = 3e-19
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 5 aaaaggtagatagaacaggtcttgtgtgcaaaatgaattcaagacctacttatctaccaa 64
||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct: 64 aaaaggtggatagaacaggtcttgtttgcaaaataaattcaagacctacttatcttccaa 123
Query: 65 cag 67
|||
Sbjct: 124 cag 126
>RF00426;SCARNA15;AANU01259224.1/203-329 9544:Macaca mulatta (rhesus
monkey)
Length = 127
Score = 89.7 bits (45), Expect = 4e-18
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 1 aatgaaaaggtagatagaacaggtcttgtgtgcaaaatgaattcaagacctacttatcta 60
||||||||| || |||||||||||||||| | |||||| |||||||||||||||||||||
Sbjct: 59 aatgaaaagataaatagaacaggtcttgtttacaaaataaattcaagacctacttatcta 118
Query: 61 ccaacagca 69
||||||||
Sbjct: 119 tcaacagca 127
>RF00426;SCARNA15;AAKN02018069.1/1858-1942 10141:Cavia porcellus
(domestic guinea pig)
Length = 85
Score = 89.7 bits (45), Expect = 4e-18
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 1 aatgaaaaggtagatagaacaggtcttgtgtgcaaaatgaattcaagacctacttatcta 60
||||||||||||||||||||||||| ||| ||||||| || |||||||||||||||||
Sbjct: 17 aatgaaaaggtagatagaacaggtcctgtttgcaaaagaaacccaagacctacttatcta 76
Query: 61 ccaacagca 69
|||||||||
Sbjct: 77 ccaacagca 85
>RF00426;SCARNA15;AAGW01181484.1/4968-4842 9986:Oryctolagus
cuniculus (rabbit)
Length = 127
Score = 89.7 bits (45), Expect = 4e-18
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 1 aatgaaaaggtagatagaacaggtcttgtgtgcaaaatgaattcaagacctacttatcta 60
||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||
Sbjct: 59 aatgaaaaggtagatagaacaggtcttgttcgcaaaggaagttcaagacctacttatcta 118
Query: 61 ccaacagca 69
|||||||||
Sbjct: 119 ccaacagca 127
>RF00426;SCARNA15;AAIY01143864.1/664-778 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 115
Score = 89.7 bits (45), Expect = 4e-18
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 5 aaaaggtagatagaacaggtcttgtgtgcaaaatgaattcaagacctacttatctaccaa 64
||||||||| |||||||||||||||| || |||| |||||||||||||| ||||||||||
Sbjct: 51 aaaaggtaggtagaacaggtcttgtgagcgaaataaattcaagacctacatatctaccaa 110
Query: 65 cagca 69
|||||
Sbjct: 111 cagca 115
>RF00426;SCARNA15;AANN01732064.1/1528-1403 9365:Erinaceus europaeus
(western European hedgehog)
Length = 126
Score = 85.7 bits (43), Expect = 7e-17
Identities = 62/67 (92%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 2 atgaaaaggtagatagaacaggtcttgtgtgcaaaatgaattcaagacctacttatctac 61
||||||||||||||||||||||||||| |||||| || |||||||||||||||| ||| |
Sbjct: 60 atgaaaaggtagatagaacaggtcttg-gtgcaagataaattcaagacctacttctctgc 118
Query: 62 caacagc 68
|||||||
Sbjct: 119 caacagc 125
>RF00426;SCARNA15;ABRT010138948.1/1817-1690 9478:Tarsius syrichta
(Philippine tarsier)
Length = 128
Score = 85.7 bits (43), Expect = 7e-17
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 3 tgaaaaggtagatagaacaggtcttgtgtgcaaaatgaattcaagacctacttatctacc 62
||||||||||||||||||| ||||||| || ||||| |||||||||||||||||||||
Sbjct: 62 tgaaaaggtagatagaacaagtcttgtatgaaaaataggttcaagacctacttatctacc 121
Query: 63 aacagca 69
|||||||
Sbjct: 122 aacagca 128
>RF00426;SCARNA15;ABRT010511928.1/2990-3114 9478:Tarsius syrichta
(Philippine tarsier)
Length = 125
Score = 83.8 bits (42), Expect = 3e-16
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 8 aggtagatagaacaggtcttgtgtgcaaaatgaattcaagacctacttatctaccaacag 67
||||||||| | |||||||||| |||| |||||||||||||||||||| |||||||||||
Sbjct: 64 aggtagatacagcaggtcttgtttgcagaatgaattcaagacctacttgtctaccaacag 123
Query: 68 ca 69
||
Sbjct: 124 ca 125
>RF00426;SCARNA15;CABD01010008.1/10785-10659 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 127
Score = 81.8 bits (41), Expect = 1e-15
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 1 aatgaaaaggtagatagaacaggtcttgtgtgcaaaatgaattcaagacctacttatcta 60
||||||| | |||| |||||||||||||| |||||||| |||||||||||||||| ||||
Sbjct: 59 aatgaaaggatagacagaacaggtcttgtttgcaaaataaattcaagacctacttgtcta 118
Query: 61 ccaacagca 69
|| ||||||
Sbjct: 119 ccgacagca 127
>RF00426;SCARNA15;AAGW01384269.1/1466-1381 9986:Oryctolagus
cuniculus (rabbit)
Length = 86
Score = 81.8 bits (41), Expect = 1e-15
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 1 aatgaaaaggtagatagaacaggtcttgtgtgcaaaatgaattcaagacctacttatcta 60
||||||||| ||||||||||||||||||| | |||| | ||||||| |||||||||||||
Sbjct: 18 aatgaaaagatagatagaacaggtcttgtttacaaagtaaattcaaaacctacttatcta 77
Query: 61 ccaacagca 69
||| |||||
Sbjct: 78 ccagcagca 86
>RF00426;SCARNA15;AAIY01626672.1/2150-2024 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 127
Score = 81.8 bits (41), Expect = 1e-15
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 1 aatgaaaaggtagatagaacaggtcttgtgtgcaaaatgaattcaagacctacttatcta 60
|||||||||||||||||||||||||||||| | |||| ||||||||| ||| ||||||
Sbjct: 59 aatgaaaaggtagatagaacaggtcttgtgaacgaaatatattcaagacttacatatcta 118
Query: 61 ccaacagca 69
|||||||||
Sbjct: 119 ccaacagca 127
>RF00426;SCARNA15;ABGA01163946.1/1947-1823 9601:Pongo abelii
(Sumatran orangutan)
Length = 125
Score = 79.8 bits (40), Expect = 4e-15
Identities = 52/56 (92%)
Strand = Plus / Plus
Query: 5 aaaaggtagatagaacaggtcttgtgtgcaaaatgaattcaagacctacttatcta 60
||||| ||||||||||||||||||| |||||||| ||||||||| |||||||||||
Sbjct: 61 aaaagatagatagaacaggtcttgtttgcaaaataaattcaagatctacttatcta 116
>RF00426;SCARNA15;ABRT010179799.1/88-195 9478:Tarsius syrichta
(Philippine tarsier)
Length = 108
Score = 75.8 bits (38), Expect = 6e-14
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 12 agatagaacaggtcttgtgtgcaaaatgaattcaagacctacttatctaccaacagca 69
|||||||||||||||||| || ||| | ||||||||||||||||||||||| ||||||
Sbjct: 51 agatagaacaggtcttgtttgaaaagtaaattcaagacctacttatctacctacagca 108
>RF00426;SCARNA15;AANN01624857.1/5804-5929 9365:Erinaceus europaeus
(western European hedgehog)
Length = 126
Score = 69.9 bits (35), Expect = 4e-12
Identities = 57/63 (90%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 7 aaggtagatagaacaggtcttgtgtgcaaaatgaattcaagacctacttatctaccaaca 66
|||||||||||||||||||||| |||| | || |||||||||||||||| ||| ||||||
Sbjct: 65 aaggtagatagaacaggtcttg-gtgcgagataaattcaagacctacttctctgccaaca 123
Query: 67 gca 69
|||
Sbjct: 124 gca 126
>RF00426;SCARNA15;AALT01503069.1/3751-3878 42254:Sorex araneus
(European shrew)
Length = 128
Score = 61.9 bits (31), Expect = 1e-09
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 8 aggtagatagaacaggtcttgtgtgcaaaatgaattcaagacctacttatctaccaaca 66
||||||| ||||||||||||||||||| | |||| |||| ||||| ||||||||||||
Sbjct: 67 aggtagaaagaacaggtcttgtgtgcacagtgaacgcaaggcctacgtatctaccaaca 125
>RF00426;SCARNA15;AALT01439725.1/4063-3943 42254:Sorex araneus
(European shrew)
Length = 121
Score = 61.9 bits (31), Expect = 1e-09
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 1 aatgaaaaggtagatagaacaggtcttgtgtgcaaaatgaattcaagacctacttatct 59
|||| ||||| |||| ||||||| |||||||||||| | ||| ||||||||||||||||
Sbjct: 53 aatgtaaagggagatggaacaggccttgtgtgcaaagtaaatgcaagacctacttatct 111
>RF00426;SCARNA15;ABDC01578720.1/90-204 30608:Microcebus murinus
(gray mouse lemur)
Length = 115
Score = 54.0 bits (27), Expect = 2e-07
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 16 agaacaggtcttgtgtgcaaaatgaattcaagacctacttatctaccaaca 66
|||| |||||||| | |||||| ||||||| |||||||||||||||||||
Sbjct: 62 agaataggtcttgcttacaaaataaattcaaaacctacttatctaccaaca 112
>RF00426;SCARNA15;AALT01344417.1/1325-1208 42254:Sorex araneus
(European shrew)
Length = 118
Score = 42.1 bits (21), Expect = 9e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 40 aattcaagacctacttatctaccaa 64
||||| |||||||||||||||||||
Sbjct: 89 aattccagacctacttatctaccaa 113
