miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00426;SCARNA15;ABRP01111780.1/6805-6932 132908:Pteropus
vampyrus (large flying fox)
Length = 128
Score = 119 bits (60), Expect = 4e-27
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 1 ctggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 60
>RF00426;SCARNA15;AAFC03006841.1/13717-13584 9913:Bos taurus
(cattle)
Length = 134
Score = 119 bits (60), Expect = 4e-27
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 1 ctggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 60
>RF00426;SCARNA15;ABRN01449409.1/11290-11418 9739:Tursiops
truncatus (bottlenosed dolphin)
Length = 129
Score = 119 bits (60), Expect = 4e-27
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 1 ctggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 60
>RF00426;SCARNA15;AAIY01716225.1/648-522 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 127
Score = 119 bits (60), Expect = 4e-27
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 1 ctggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 60
>RF00423;SCARNA4;ABRP01111780.1/6804-6932 132908:Pteropus vampyrus
(large flying fox)
Length = 129
Score = 119 bits (60), Expect = 4e-27
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 1 ctggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ctggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 61
>RF00423;SCARNA4;AAIY01716225.1/649-522 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 128
Score = 119 bits (60), Expect = 4e-27
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 1 ctggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ctggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 61
>RF00426;SCARNA15;AANN01670216.1/502-630 9365:Erinaceus europaeus
(western European hedgehog)
Length = 129
Score = 117 bits (59), Expect = 1e-26
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 2 tggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 60
>RF00426;SCARNA15;AANG01021475.1/9613-9486 9685:Felis catus
(domestic cat)
Length = 128
Score = 111 bits (56), Expect = 9e-25
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 1 ctggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1 ctggaggactaagaaggctgagtctggtgaagcaagactctgctgatacaatcctcctag 60
>RF00426;SCARNA15;ABQO010374208.1/1174-1047 9315:Macropus eugenii
(tammar wallaby)
Length = 128
Score = 109 bits (55), Expect = 4e-24
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 1 ctggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctccta 59
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 ctggaggactaagaaggctgagtctgatgaagctagactctgctgatacaatcctccta 59
>RF00426;SCARNA15;AAFR03052106.1/48120-48247 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 128
Score = 109 bits (55), Expect = 4e-24
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 1 ctggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctccta 59
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 ctggaggactaagaaggctgagtctgatgaagctagactctgctgatacaatcctccta 59
>RF00426;SCARNA15;ABRQ01205383.1/983-1110 9813:Procavia capensis
(cape rock hyrax)
Length = 128
Score = 109 bits (55), Expect = 4e-24
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 2 tggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 60
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2 tggaggactaagaaggctgagtctgatgaagcaaggctctgctgatacaatcctcctag 60
>RF00423;SCARNA4;AAFR03052106.1/48119-48247 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 129
Score = 109 bits (55), Expect = 4e-24
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 1 ctggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctccta 59
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 2 ctggaggactaagaaggctgagtctgatgaagctagactctgctgatacaatcctccta 60
>RF00423;SCARNA4;ABRQ01205383.1/982-1110 9813:Procavia capensis
(cape rock hyrax)
Length = 129
Score = 109 bits (55), Expect = 4e-24
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 2 tggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 60
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 3 tggaggactaagaaggctgagtctgatgaagcaaggctctgctgatacaatcctcctag 61
>RF00426;SCARNA15;ABVD01138280.1/466-593 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 128
Score = 107 bits (54), Expect = 1e-23
Identities = 57/58 (98%)
Strand = Plus / Plus
Query: 3 ggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 3 ggaggactaagaaggctgagtctgatgaagcaagactctgctgatacattcctcctag 60
>RF00426;SCARNA15;AAGV020375682.1/3326-3454 9361:Dasypus
novemcinctus (nine-banded armadillo)
Length = 129
Score = 103 bits (52), Expect = 2e-22
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 1 ctggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 60
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 1 ctggaggactaagaaggctgagtctgatgaagtaagactctgctgatacattcctcctag 60
>RF00426;SCARNA15;ABRT010447548.1/1694-1821 9478:Tarsius syrichta
(Philippine tarsier)
Length = 128
Score = 103 bits (52), Expect = 2e-22
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 1 ctggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 60
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 1 ctggaggactaagaaggctgagtctgatgaagcaagactttgctgatacattcctcctag 60
>RF00426;SCARNA15;AAGW01154649.1/1745-1873 9986:Oryctolagus
cuniculus (rabbit)
Length = 129
Score = 103 bits (52), Expect = 2e-22
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 1 ctggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 60
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 1 ctggaggactaagaaggctgagtctgatgaagcaagactcggctgatacactcctcctag 60
>RF00426;SCARNA15;AAIY01422800.1/151-30 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 122
Score = 103 bits (52), Expect = 2e-22
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 1 ctggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 60
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 ctggaggactaagaagactgagtctgatgaagcaagactctgctgatataatcctcctag 60
>RF00423;SCARNA4;ABRT010447548.1/1693-1821 9478:Tarsius syrichta
(Philippine tarsier)
Length = 129
Score = 103 bits (52), Expect = 2e-22
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 1 ctggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 60
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 2 ctggaggactaagaaggctgagtctgatgaagcaagactttgctgatacattcctcctag 61
>RF00423;SCARNA4;AAGW01154649.1/1744-1873 9986:Oryctolagus
cuniculus (rabbit)
Length = 130
Score = 103 bits (52), Expect = 2e-22
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 1 ctggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 60
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 2 ctggaggactaagaaggctgagtctgatgaagcaagactcggctgatacactcctcctag 61
>RF00423;SCARNA4;AAIY01422800.1/152-30 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 123
Score = 103 bits (52), Expect = 2e-22
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 1 ctggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 60
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2 ctggaggactaagaagactgagtctgatgaagcaagactctgctgatataatcctcctag 61
>RF00426;SCARNA15;AAKN02015658.1/41427-41300 10141:Cavia porcellus
(domestic guinea pig)
Length = 128
Score = 101 bits (51), Expect = 9e-22
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 1 ctggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctccta 59
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 1 ctggaggactaagaaggctgagtctgatgaagcaagactttgctgatacattcctccta 59
>RF00423;SCARNA4;AANN01319141.1/3147-3020 9365:Erinaceus europaeus
(western European hedgehog)
Length = 128
Score = 101 bits (51), Expect = 9e-22
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 2 tggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 60
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 3 tggaagactaagaaggctgagtctgatgaagcaagaccctgctgatacaatcctcctag 61
>RF00426;SCARNA15;AAEX02026293.1/11483-11610 9615:Canis lupus
familiaris (dog)
Length = 128
Score = 95.6 bits (48), Expect = 5e-20
Identities = 57/60 (95%)
Strand = Plus / Plus
Query: 1 ctggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 60
|||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 1 ctggaggactaagaaggcggagtctggtgaagtaagactctgctgatacaatcctcctag 60
>RF00426;SCARNA15;AAPY01340777.1/684-811 37347:Tupaia belangeri
(northern tree shrew)
Length = 128
Score = 95.6 bits (48), Expect = 5e-20
Identities = 57/60 (95%)
Strand = Plus / Plus
Query: 1 ctggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 60
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 1 ctggaggactaagaaggctgagtctgatgaagcaagactttgctgataccctcctcctag 60
>RF00426;SCARNA15;AADC01007358.1/30390-30517 9606:Homo sapiens
(human)
Length = 128
Score = 95.6 bits (48), Expect = 5e-20
Identities = 57/60 (95%)
Strand = Plus / Plus
Query: 1 ctggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 60
|||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||
Sbjct: 1 ctggaggactaagaaggctgagtctgatgaagtaagactttgctgatacattcctcctag 60
>RF00423;SCARNA4;AAEX02026293.1/11482-11610 9615:Canis lupus
familiaris (dog)
Length = 129
Score = 95.6 bits (48), Expect = 5e-20
Identities = 57/60 (95%)
Strand = Plus / Plus
Query: 1 ctggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 60
|||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 2 ctggaggactaagaaggcggagtctggtgaagtaagactctgctgatacaatcctcctag 61
>RF00426;SCARNA15;AAIY01389556.1/6328-6452 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 125
Score = 91.7 bits (46), Expect = 8e-19
Identities = 55/57 (96%), Gaps = 2/57 (3%)
Strand = Plus / Plus
Query: 1 ctggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcc 57
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 ctggaggactaagaaggctgagtctgatgaagcaaga--ctgctgatacaatcctcc 55
>RF00423;SCARNA4;AAIY01389556.1/6327-6452 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 126
Score = 91.7 bits (46), Expect = 8e-19
Identities = 55/57 (96%), Gaps = 2/57 (3%)
Strand = Plus / Plus
Query: 1 ctggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcc 57
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 2 ctggaggactaagaaggctgagtctgatgaagcaaga--ctgctgatacaatcctcc 56
>RF00426;SCARNA15;AALT01070738.1/639-766 42254:Sorex araneus
(European shrew)
Length = 128
Score = 87.7 bits (44), Expect = 1e-17
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 1 ctggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 60
|||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 ctggaggatcaagaaggcggagtctgatgaagcaagactcggctgatacaatcctcctag 60
>RF00426;SCARNA15;AAPE01190368.1/2496-2370 59463:Myotis lucifugus
(little brown bat)
Length = 127
Score = 87.7 bits (44), Expect = 1e-17
Identities = 58/60 (96%), Gaps = 2/60 (3%)
Strand = Plus / Plus
Query: 1 ctggaggactaagaaggctgagt-ctgatgaagcaagactctgctgatacaatcctccta 59
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctggaggacta-gaaggctgagttctgatgaagcaagactctgctgatacaatcctccta 59
>RF00423;SCARNA4;AALT01070738.1/638-766 42254:Sorex araneus
(European shrew)
Length = 129
Score = 87.7 bits (44), Expect = 1e-17
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 1 ctggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 60
|||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 2 ctggaggatcaagaaggcggagtctgatgaagcaagactcggctgatacaatcctcctag 61
>RF00423;SCARNA4;AAPE01190368.1/2497-2370 59463:Myotis lucifugus
(little brown bat)
Length = 128
Score = 87.7 bits (44), Expect = 1e-17
Identities = 58/60 (96%), Gaps = 2/60 (3%)
Strand = Plus / Plus
Query: 1 ctggaggactaagaaggctgagt-ctgatgaagcaagactctgctgatacaatcctccta 59
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2 ctggaggacta-gaaggctgagttctgatgaagcaagactctgctgatacaatcctccta 60
>RF00426;SCARNA15;AAHY01419479.1/793-919 10090:Mus musculus (house
mouse)
Length = 127
Score = 79.8 bits (40), Expect = 3e-15
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 1 ctggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 60
|||||||| ||| ||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 1 ctggaggatcaaggaggctgagtctgatgaagcaagactttgctgatacactcctcctag 60
>RF00426;SCARNA15;AC130527.4/196569-196441 10090:Mus musculus
(house mouse)
Length = 129
Score = 79.8 bits (40), Expect = 3e-15
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 1 ctggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 60
|||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 1 ctggaggatcaagaaggctgagtctgatgaagcaagactttgctgatacgctcctcctag 60
>RF00426;SCARNA15;ABRO01239698.1/101-229 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 129
Score = 75.8 bits (38), Expect = 5e-14
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 11 aagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 60
||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 12 aagaaggctgagtctgatgaagcaagacttcgctgatacactcctcctag 61
>RF00423;SCARNA4;AABR04008299.1/6626-6749 10116:Rattus norvegicus
(Norway rat)
Length = 124
Score = 75.8 bits (38), Expect = 5e-14
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 11 aagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 60
|||| |||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 11 aagacggctgagtctgatgaagcaagactctgccgatacactcctcctag 60
>RF00423;SCARNA4;ABRO01239698.1/100-229 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 130
Score = 75.8 bits (38), Expect = 5e-14
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 11 aagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 60
||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 13 aagaaggctgagtctgatgaagcaagacttcgctgatacactcctcctag 62
>RF00426;SCARNA15;CAAA01003033.1/16451-16325 10090:Mus musculus
(house mouse)
Length = 127
Score = 71.9 bits (36), Expect = 8e-13
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 1 ctggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 60
|||||||| ||||||||||||||||||||||||||||| || |||||| |||||||||
Sbjct: 1 ctggaggatcaagaaggctgagtctgatgaagcaagactttgatgatacgctcctcctag 60
>RF00426;SCARNA15;AAYZ01608759.1/255-126 9978:Ochotona princeps
(American pika)
Length = 130
Score = 71.9 bits (36), Expect = 8e-13
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 1 ctggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 60
|||||||||||||||||| |||||||||||||||| || ||||||||| |||||||||
Sbjct: 1 ctggaggactaagaaggccaagtctgatgaagcaagccttggctgatacactcctcctag 60
>RF00423;SCARNA4;AAQR01523752.1/1444-1572 30611:Otolemur garnettii
(small-eared galago)
Length = 129
Score = 71.9 bits (36), Expect = 8e-13
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 1 ctggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctc 56
|||||||||||||||||||||||||||||||| |||| | ||||||||| |||||
Sbjct: 2 ctggaggactaagaaggctgagtctgatgaagtaagatttggctgatacattcctc 57
>RF00423;SCARNA4;AAYZ01608759.1/256-126 9978:Ochotona princeps
(American pika)
Length = 131
Score = 71.9 bits (36), Expect = 8e-13
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 1 ctggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 60
|||||||||||||||||| |||||||||||||||| || ||||||||| |||||||||
Sbjct: 2 ctggaggactaagaaggccaagtctgatgaagcaagccttggctgatacactcctcctag 61
>RF00426;SCARNA15;AAGU02279523.1/8199-8064 9785:Loxodonta africana
(African savanna elephant)
Length = 136
Score = 63.9 bits (32), Expect = 2e-10
Identities = 52/56 (92%), Gaps = 2/56 (3%)
Strand = Plus / Plus
Query: 1 ctggaggactaagaag-gctgagtctgatgaagcaagac-tctgctgatacaatcc 54
||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||
Sbjct: 1 ctggaggactaagaaaagctgattctgatgaagcaagacttctgctgatacaatcc 56
>RF00423;SCARNA4;AAGU02279523.1/8200-8064 9785:Loxodonta africana
(African savanna elephant)
Length = 137
Score = 63.9 bits (32), Expect = 2e-10
Identities = 52/56 (92%), Gaps = 2/56 (3%)
Strand = Plus / Plus
Query: 1 ctggaggactaagaag-gctgagtctgatgaagcaagac-tctgctgatacaatcc 54
||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||
Sbjct: 2 ctggaggactaagaaaagctgattctgatgaagcaagacttctgctgatacaatcc 57
>RF00423;SCARNA4;AAHY01019331.1/99332-99455 10090:Mus musculus
(house mouse)
Length = 124
Score = 61.9 bits (31), Expect = 8e-10
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 1 ctggaggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcct 55
|||||||| ||| ||||||||||||||||||||||||| ||| |||||| ||||
Sbjct: 2 ctggaggatcaagtaggctgagtctgatgaagcaagactttgccgatacactcct 56
>RF00423;SCARNA4;AAIY01133658.1/1253-1376 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 124
Score = 60.0 bits (30), Expect = 3e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 2 tggaggactaagaaggctgagtctgatgaagcaagact 39
|||||| |||||||||| ||||||||||||||||||||
Sbjct: 3 tggaggcctaagaaggccgagtctgatgaagcaagact 40
>RF00426;SCARNA15;AAPE01099025.1/1669-1798 59463:Myotis lucifugus
(little brown bat)
Length = 130
Score = 58.0 bits (29), Expect = 1e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 11 aagaaggctgagtctgatgaagcaagact 39
|||||||||||||||||||||||||||||
Sbjct: 14 aagaaggctgagtctgatgaagcaagact 42
>RF00423;SCARNA4;AAPE01099025.1/1668-1798 59463:Myotis lucifugus
(little brown bat)
Length = 131
Score = 58.0 bits (29), Expect = 1e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 11 aagaaggctgagtctgatgaagcaagact 39
|||||||||||||||||||||||||||||
Sbjct: 15 aagaaggctgagtctgatgaagcaagact 43
>RF00423;SCARNA4;AABR04001367.1/47064-46935 10116:Rattus
norvegicus (Norway rat)
Length = 130
Score = 56.0 bits (28), Expect = 5e-08
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 12 agaaggctgagtctgatgaagcaagactctgctgatacaatcct 55
||||| |||||||||||||||||||| | |||||||||| ||||
Sbjct: 13 agaagcctgagtctgatgaagcaagattttgctgatacactcct 56
>RF00423;SCARNA4;AAIY01470010.1/1326-1454 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 129
Score = 56.0 bits (28), Expect = 5e-08
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 5 aggactaagaaggctgagtctgatgaagcaagactctgctgatacaatcctcctag 60
|||||||||||||| || |||||||||||||||||| ||||||| ||||||||
Sbjct: 6 aggactaagaaggccaagactgatgaagcaagactctattgatacagacctcctag 61
>RF00423;SCARNA4;AAWR02033669.1/78782-78653 9796:Equus caballus
(horse)
Length = 130
Score = 52.0 bits (26), Expect = 7e-07
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 1 ctggaggactaagaaggctgagtctgatgaagcaagactctgctga 46
||||| ||||||| ||||||||||||| ||||||||||||||||
Sbjct: 2 ctggatgactaaggaggctgagtctgacacagcaagactctgctga 47
>RF00423;SCARNA4;AAQR01315313.1/1173-1280 30611:Otolemur garnettii
(small-eared galago)
Length = 108
Score = 52.0 bits (26), Expect = 7e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 7 gactaagaaggctgagtctgatgaag 32
||||||||||||||||||||||||||
Sbjct: 7 gactaagaaggctgagtctgatgaag 32
>RF00423;SCARNA4;AALT01044626.1/1776-1651 42254:Sorex araneus
(European shrew)
Length = 126
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 30 aagcaagactctgctgatacaatcc 54
|||||||||||||||||||||||||
Sbjct: 30 aagcaagactctgctgatacaatcc 54
>RF00423;SCARNA4;AL607108.17/180393-180267 10090:Mus musculus
(house mouse)
Length = 127
Score = 48.1 bits (24), Expect = 1e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 12 agaaggctgagtctgatgaagcaagactctgctgat 47
|||||||||||| |||||||||| |||| |||||||
Sbjct: 13 agaaggctgagtgtgatgaagcaggactttgctgat 48
>RF00423;SCARNA4;AC122365.4/177856-177999 10090:Mus musculus
(house mouse)
Length = 144
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 aaggctgagtctgatgaagcaaga 37
||||||||||||||||||||||||
Sbjct: 13 aaggctgagtctgatgaagcaaga 36
>RF00423;SCARNA4;AAGU02477719.1/4495-4369 9785:Loxodonta africana
(African savanna elephant)
Length = 127
Score = 46.1 bits (23), Expect = 4e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 1 ctggaggactaagaaggctgagtctgatgaagcaagact 39
||||| ||| |||||||| || |||||||||||||||||
Sbjct: 2 ctggatgaccaagaaggcagaatctgatgaagcaagact 40
>RF00423;SCARNA4;AAIY01269716.1/1828-1698 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 131
Score = 42.1 bits (21), Expect = 7e-04
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Plus
Query: 25 tgatgaagca-agactctgctgatacaatcctc 56
|||||||||| |||||||| |||||||||||||
Sbjct: 26 tgatgaagcatagactctgttgatacaatcctc 58
