miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AAQR01020418.1/249-164 30611:Otolemur garnettii
(small-eared galago)
Length = 86
Score = 109 bits (55), Expect = 5e-24
Identities = 75/79 (94%), Gaps = 2/79 (2%)
Strand = Plus / Minus
Query: 6 ggaaggcagtaggttgtatagttatcttccgagggggcaacatcact-accctgaaacca 64
||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||
Sbjct: 82 ggaaggcagtaggttgtatagttatcttctga-ggggcaacatcactgcccctgaaacca 24
Query: 65 cacaacctactacctcacc 83
|||||||||||||||||||
Sbjct: 23 cacaacctactacctcacc 5
>RF00027;let-7;AANH01001398.1/49056-49141 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 107 bits (54), Expect = 2e-23
Identities = 72/78 (92%)
Strand = Plus / Minus
Query: 6 ggaaggcagtaggttgtatagttatcttccgagggggcaacatcactaccctgaaaccac 65
||||||||||| ||||||||||||||||| || |||||| |||||||||| ||||||||
Sbjct: 82 ggaaggcagtatgttgtatagttatcttctgatcgggcaaaatcactaccccgaaaccac 23
Query: 66 acaacctactacctcacc 83
||||||||||||||||||
Sbjct: 22 acaacctactacctcacc 5
>RF00027;let-7;AAWZ01027397.1/1152-1066 28377:Anolis carolinensis
(green anole)
Length = 87
Score = 103 bits (52), Expect = 3e-22
Identities = 74/80 (92%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 5 aggaaggcagtaggttgtatagttatcttccgag-ggggcaacatcactaccctgaaacc 63
|||||||||||||||||||||||||||| | || ||||||| || ||||||||||||||
Sbjct: 84 aggaaggcagtaggttgtatagttatctcctgattggggcaaaatgactaccctgaaacc 25
Query: 64 acacaacctactacctcacc 83
||||||||||||||||||||
Sbjct: 24 acacaacctactacctcacc 5
>RF00027;let-7;AAVX01031590.1/1741-1655 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 99.6 bits (50), Expect = 5e-21
Identities = 72/78 (92%), Gaps = 1/78 (1%)
Strand = Plus / Minus
Query: 6 ggaaggcagtaggttgtatagttatcttccgagggggcaaca-tcactaccctgaaacca 64
||||||||||||||||||||||||||| | || ||||||| | ||||||||||||||| |
Sbjct: 83 ggaaggcagtaggttgtatagttatctcctgatggggcaaaaatcactaccctgaaacta 24
Query: 65 cacaacctactacctcac 82
||||||||||||||||||
Sbjct: 23 cacaacctactacctcac 6
>RF00027;let-7;AAPN01341034.1/3404-3318 9258:Ornithorhynchus
anatinus (platypus)
Length = 87
Score = 97.6 bits (49), Expect = 2e-20
Identities = 71/77 (92%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 6 ggaaggcagtaggttgtatagttatcttccgag-ggggcaacatcactaccctgaaacca 64
||||||||||||| ||||||||||||||| || ||||||| |||||| |||||||||||
Sbjct: 83 ggaaggcagtaggctgtatagttatcttctgattggggcaaaatcactcccctgaaacca 24
Query: 65 cacaacctactacctca 81
|||||||||||||||||
Sbjct: 23 cacaacctactacctca 7
>RF00027;let-7;BAAE01218263.1/598-683 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 91.7 bits (46), Expect = 1e-18
Identities = 70/78 (89%)
Strand = Plus / Minus
Query: 6 ggaaggcagtaggttgtatagttatcttccgagggggcaacatcactaccctgaaaccac 65
|||||||||||||||||||||||| || | | |||| || ||||| |||||||||||||
Sbjct: 82 ggaaggcagtaggttgtatagttagctccttatggggtaaaatcacaaccctgaaaccac 23
Query: 66 acaacctactacctcacc 83
||||||||||||||||||
Sbjct: 22 acaacctactacctcacc 5
>RF00027;let-7;AAGW01230269.1/1770-1854 9986:Oryctolagus cuniculus
(rabbit)
Length = 85
Score = 83.8 bits (42), Expect = 3e-16
Identities = 70/78 (89%), Gaps = 1/78 (1%)
Strand = Plus / Minus
Query: 6 ggaaggcagtaggttgtatagttatcttccgagggggcaacatcactaccctgaaaccac 65
||||||||||||| ||||||||||||| | |||||| | ||| | || ||||||||||||
Sbjct: 81 ggaaggcagtaggctgtatagttatctgctgagggg-cgacaccgctgccctgaaaccac 23
Query: 66 acaacctactacctcacc 83
||||||||||||||||||
Sbjct: 22 acaacctactacctcacc 5
>RF00027;let-7;AAPY01023439.1/425-342 37347:Tupaia belangeri
(northern tree shrew)
Length = 84
Score = 71.9 bits (36), Expect = 1e-12
Identities = 68/76 (89%), Gaps = 2/76 (2%)
Strand = Plus / Minus
Query: 8 aaggcagtaggttgtatagttatcttccgagggggcaacatcactaccctgaaaccacac 67
|||| |||||||||| ||||||| | | |||||| |||||||||| |||||||||||||
Sbjct: 78 aaggaagtaggttgtgtagttatttgctgagggg-caacatcactgccctgaaaccaca- 21
Query: 68 aacctactacctcacc 83
||||||||||||||||
Sbjct: 20 aacctactacctcacc 5
>RF00027;let-7;CAAB01000053.1/115251-115164 31033:Takifugu
rubripes
Length = 88
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 4 gaggaaggcagtaggttgtatagttatct 32
||||||||||||| |||||||||||||||
Sbjct: 86 gaggaaggcagtaagttgtatagttatct 58
>RF00027;let-7;AANH01006181.1/186306-186220 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 87
Score = 50.1 bits (25), Expect = 4e-06
Identities = 65/77 (84%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 6 ggaaggcagtaggttgtatagttatcttcc-gagggggcaacatcactaccctgaaacca 64
|||||||| ||| ||||||||||||||||| | |||||| |||||||||| |||| |
Sbjct: 83 ggaaggcaatagattgtatagttatcttccaaacagggcaaaatcactaccccaaaacta 24
Query: 65 cacaacctactacctca 81
|||| |||||||||||
Sbjct: 23 tacaatctactacctca 7
>RF00027;let-7;BAAF04002393.1/17587-17677 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 4 gaggaaggcagtaggttgtatagttatct 32
||||||||||||| |||||||||||||||
Sbjct: 89 gaggaaggcagtaagttgtatagttatct 61
>RF00027;let-7;AAGU02300353.1/1892-1804 9785:Loxodonta africana
(African savanna elephant)
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 13 agtaggttgtatagttatcttc 34
||||||||||||||||||||||
Sbjct: 78 agtaggttgtatagttatcttc 57
>RF00027;let-7;ABRQ01114151.1/10843-10755 9813:Procavia capensis
(cape rock hyrax)
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 13 agtaggttgtatagttatcttc 34
||||||||||||||||||||||
Sbjct: 78 agtaggttgtatagttatcttc 57
