miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRN01448853.1/6300-6378 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 79
Score = 123 bits (62), Expect = 5e-28
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 15 gtacttgaagagaggtcttccatggtgcattcgctttattctttgacgaatcatacatgg 74
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 gtacttgaagagaggtcttccatggtgcattcgctttattttttgacgaatcatacatgg 60
Query: 75 ttgacc 80
||||||
Sbjct: 61 ttgacc 66
>RF00641;mir-154;AAPY01740242.1/756-831 37347:Tupaia belangeri
(northern tree shrew)
Length = 76
Score = 67.9 bits (34), Expect = 3e-11
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 18 cttgaagagaggtcttccatggtgcattcgctttattctttgacga 63
|||||||||||||| |||||| ||||||||||||||||| ||||||
Sbjct: 5 cttgaagagaggtcctccatgatgcattcgctttattctctgacga 50
>RF00641;mir-154;AAGU02608514.1/937-1017 9785:Loxodonta africana
(African savanna elephant)
Length = 81
Score = 61.9 bits (31), Expect = 2e-09
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 14 ggtacttgaagagaggtcttccatggtgcattcgctttattctttgacgaatcatacatg 73
|||||||||||||||||||| |||| ||||||| ||||| |||| ||||||||||||
Sbjct: 1 ggtacttgaagagaggtctttcatgatgcattcatgttatttcttgatgaatcatacatg 60
Query: 74 gttgacc 80
||||||
Sbjct: 61 tttgacc 67
>RF00641;mir-154;ABRQ01054377.1/1758-1838 9813:Procavia capensis
(cape rock hyrax)
Length = 81
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 14 ggtacttgaagagaggtcttccatggtgcattc 46
||||||||||||||||||||||||| |||||||
Sbjct: 1 ggtacttgaagagaggtcttccatgatgcattc 33
>RF00641;mir-154;AAEX02019639.1/164925-165010 9615:Canis lupus
familiaris (dog)
Length = 86
Score = 56.0 bits (28), Expect = 1e-07
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 17 acttgaagagaggtcttccatggtgcattcgctttattctttgacgaatcatacatggtt 76
|||||||||||||||||| || || ||||||||| |||||| ||||||||||||||
Sbjct: 4 acttgaagagaggtcttctgtgatgtcctcgctttatcttttgaccaatcatacatggtt 63
Query: 77 gacc 80
||||
Sbjct: 64 gacc 67
>RF00641;mir-154;ABRP01151524.1/16032-16112 132908:Pteropus
vampyrus (large flying fox)
Length = 81
Score = 54.0 bits (27), Expect = 4e-07
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 14 ggtacttgaagagaggtcttccatggtgcattcgctttattctttgacgaatcatacatg 73
|||| |||||||||||||| ||||| ||| ||| |||| || | ||| ||||||||||||
Sbjct: 1 ggtatttgaagagaggtctcccatgatgcgttcactttgttttatgatgaatcatacatg 60
Query: 74 gttgacc 80
||||||
Sbjct: 61 attgacc 67
>RF00641;mir-154;CABD01018504.1/46804-46884 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 81
Score = 50.1 bits (25), Expect = 6e-06
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 24 gagaggtcttccatggtgcattcgctttattctttgacgaatcatacat 72
||||||||||||||| ||||||| |||||| |||||| |||| |||||
Sbjct: 11 gagaggtcttccatgatgcattcaatttattttttgaccaatcctacat 59
>RF00641;mir-154;AANN01387447.1/2286-2206 9365:Erinaceus europaeus
(western European hedgehog)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 18 cttgaagagaggtcttccatggtgcattcgct 49
|||| |||||||||||||||| ||||||||||
Sbjct: 5 cttggagagaggtcttccatgatgcattcgct 36
>RF00641;mir-154;ABRT010163757.1/576-654 9478:Tarsius syrichta
(Philippine tarsier)
Length = 79
Score = 46.1 bits (23), Expect = 9e-05
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 14 ggtacttgaagagaggtcttccatggtgcattcgctttattctttgacgaatcatacatg 73
|||||||| ||||||| ||||| || |||||| | ||||| |||| |||||||||||
Sbjct: 1 ggtacttggagagagggcttccttgatgcatttgacttatttgttgaggaatcatacata 60
Query: 74 gttgacc 80
|||||||
Sbjct: 61 gttgacc 67
>RF00641;mir-154;ABRQ01054377.1/1437-1516 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 46.1 bits (23), Expect = 9e-05
Identities = 54/63 (85%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 14 ggtacttgaagagaggtcttccatggtgcattcgctttattctttgacgaatcatacatg 73
|||||||||||| |||| ||| || ||| ||||||||||| | |||||||||||||| |
Sbjct: 1 ggtacttgaagataggttatccgtgttgccttcgctttatt-tgtgacgaatcatacacg 59
Query: 74 gtt 76
|||
Sbjct: 60 gtt 62
