miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRN01448850.1/5111-5190 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 80
Score = 135 bits (68), Expect = 1e-31
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 11 ggtacttgaggagaggttttctaggtctccgtttctttcatgaggatgaaacacacctgg 70
||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1 ggtacctgaggacaggttttctaggtctctgtttctttcatgaggatgaaacacacctgg 60
Query: 71 ttaaccttttttccagtatc 90
||||||||||||||||||||
Sbjct: 61 ttaaccttttttccagtatc 80
>RF00641;mir-154;AAWR02020065.1/17831-17910 9796:Equus caballus
(horse)
Length = 80
Score = 87.7 bits (44), Expect = 3e-17
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 11 ggtacttgaggagaggttttctaggtctccgtttctttcatgaggatgaaacacacctgg 70
||||| ||| ||||||||||||||||||| |||||||| ||||| |||||| ||||||
Sbjct: 1 ggtacctgaagagaggttttctaggtctctgtttctttagtgagggtgaaacgaacctgg 60
Query: 71 ttaaccttttttccagtatc 90
||||||| ||||||||||||
Sbjct: 61 ttaacctcttttccagtatc 80
>RF00641;mir-154;AAEX02019639.1/134880-134959 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 87.7 bits (44), Expect = 3e-17
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 11 ggtacttgaggagaggttttctaggtctccgtttctttcatgaggatgaaacacacctgg 70
||||| ||| |||||||||||| ||| || ||||||||||||||||||||||||||| |
Sbjct: 1 ggtacctgaagagaggttttctgggtttctgtttctttcatgaggatgaaacacacccag 60
Query: 71 ttaaccttttttccag 86
||||||| ||||||||
Sbjct: 61 ttaacctcttttccag 76
>RF00641;mir-154;ABRQ01054366.1/1167-1246 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 83.8 bits (42), Expect = 4e-16
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 21 gagaggttttctaggtctccgtttctttcatgaggatgaaacacacctggttaacctttt 80
|||||||||||| ||| || |||||||| ||| ||||||||||||||||||||||| ||
Sbjct: 11 gagaggttttctgggtttctgtttctttattgatgatgaaacacacctggttaacctctt 70
Query: 81 ttccagtatc 90
||||||||||
Sbjct: 71 ttccagtatc 80
>RF00641;mir-154;AAHY01103470.1/69341-69262 10090:Mus musculus
(house mouse)
Length = 80
Score = 75.8 bits (38), Expect = 1e-13
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 21 gagaggttttctaggtctccgtttctttcatgaggatgaaacacacctggttaacctttt 80
|||||||||||| |||||| |||||||| ||||| |||||||||||| | |||||||||
Sbjct: 11 gagaggttttctgggtctctgtttctttgatgagaatgaaacacacccagctaacctttt 70
Query: 81 ttccagtatc 90
|| |||||||
Sbjct: 71 tttcagtatc 80
>RF00641;mir-154;AAGW01360474.1/8073-8152 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 71.9 bits (36), Expect = 2e-12
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 11 ggtacttgaggagaggttttctaggtctccgtttctttcatgaggatgaaacacacctgg 70
||||| ||| |||||||||||| ||| || ||||||| |||||||||||||||||||||
Sbjct: 1 ggtacctgaagagaggttttctgggtttctgtttcttggatgaggatgaaacacacctgg 60
Query: 71 ttaaccttttttccagtatc 90
| |||| |||| |||||||
Sbjct: 61 ctcacctctttttcagtatc 80
>RF00641;mir-154;AAQR01664929.1/14898-14977 30611:Otolemur
garnettii (small-eared galago)
Length = 80
Score = 67.9 bits (34), Expect = 2e-11
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 41 gtttctttcatgaggatgaaacacacctggttaaccttttttccagtatc 90
|||||||| |||||||| |||||||||||| |||||| ||||||||||||
Sbjct: 31 gtttctttaatgaggatcaaacacacctggataacctcttttccagtatc 80
>RF00641;mir-154;ABRP01151523.1/5151-5228 132908:Pteropus vampyrus
(large flying fox)
Length = 78
Score = 65.9 bits (33), Expect = 1e-10
Identities = 60/68 (88%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 23 gaggttttctaggtctccgtttctttcatgaggatgaaacacacctggttaacctttttt 82
|||||||||||||| | |||||||| | ||||| ||||||||||||||||||| ||||
Sbjct: 13 gaggttttctaggtgt--gtttctttaacgaggacgaaacacacctggttaacccctttt 70
Query: 83 ccagtatc 90
||||||||
Sbjct: 71 ccagtatc 78
>RF00641;mir-154;AAQQ01350201.1/367-446 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 80
Score = 56.0 bits (28), Expect = 9e-08
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 11 ggtacttgaggagaggttttctaggtctccgtttctttcatgaggatgaaacacacctgg 70
||||| ||| |||||||||||| || | |||||| | ||||||||||||||| || ||
Sbjct: 1 ggtacctgaagagaggttttctgggcttgtgtttctgtgatgaggatgaaacacccccgg 60
Query: 71 ttaaccttttttccagtatc 90
||||||| ||| ||||||||
Sbjct: 61 ttaacctctttcccagtatc 80
>RF00641;mir-154;AANN01422717.1/1753-1834 9365:Erinaceus europaeus
(western European hedgehog)
Length = 82
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 56 atgaaacacacctggttaaccttttttccag 86
||||||||||||||| |||||| ||||||||
Sbjct: 48 atgaaacacacctggctaacctcttttccag 78
