miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;AAGW01206554.1/1585-1664 9986:Oryctolagus
cuniculus (rabbit)
Length = 80
Score = 135 bits (68), Expect = 1e-31
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 14 catacttgaggagaaattatccttggtgtgttcactttatttgggatgaatcatacaagg 73
||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||
Sbjct: 1 catacttgaggagaaattatccttggtgtgttcgctttattcgtgatgaatcatacaagg 60
Query: 74 acaatttctttttgagtatc 93
||||||||||||||||||||
Sbjct: 61 acaatttctttttgagtatc 80
>RF00641;mir-154;AABR04040370.1/14458-14381 10116:Rattus
norvegicus (Norway rat)
Length = 78
Score = 81.8 bits (41), Expect = 2e-15
Identities = 71/80 (88%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 14 catacttgaggagaaattatccttggtgtgttcactttatttgggatgaatcatacaagg 73
|||||||||||||||||||||||||||||||| | | ||| |||||||||||||||||
Sbjct: 1 catacttgaggagaaattatccttggtgtgtttgc--tcttttggatgaatcatacaagg 58
Query: 74 acaatttctttttgagtatc 93
|||||||||| |||||||
Sbjct: 59 gtaatttcttttcgagtatc 78
>RF00641;mir-154;AAQR01332678.1/6090-6172 30611:Otolemur garnettii
(small-eared galago)
Length = 83
Score = 69.9 bits (35), Expect = 7e-12
Identities = 58/65 (89%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 32 atccttggtgtgttcactttatttgggatgaatca---tacaaggacaatttctttttga 88
||||||||| |||| |||||||||| ||||||||| ||||||||||||||||||| ||
Sbjct: 19 atccttggtatgtttactttatttgtgatgaatcatcatacaaggacaatttcttttaga 78
Query: 89 gtatc 93
|||||
Sbjct: 79 gtatc 83
>RF00641;mir-154;AAIY01699599.1/4687-4765 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 79
Score = 60.0 bits (30), Expect = 6e-09
Identities = 67/78 (85%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 16 tacttgaggagaaattatccttggtgtgttcactttatttgggatgaatcatacaaggac 75
||||||||||||||||| |||||||||||| ||||| | || |||||| |||||||
Sbjct: 3 tacttgaggagaaattacccttggtgtgttggcttta-tcacgacaaatcatccaaggac 61
Query: 76 aatttctttttgagtatc 93
|||||||| |||||||||
Sbjct: 62 aatttcttgttgagtatc 79
>RF00641;mir-154;ABDC01257673.1/14547-14626 30608:Microcebus
murinus (gray mouse lemur)
Length = 80
Score = 50.1 bits (25), Expect = 6e-06
Identities = 61/73 (83%)
Strand = Plus / Plus
Query: 21 gaggagaaattatccttggtgtgttcactttatttgggatgaatcatacaaggacaattt 80
|||||| ||||| ||||| ||||||||||||||||| || || || |||||||| ||
Sbjct: 8 gaggagcaattacccttgctgtgttcactttatttgtgactaaccacacaaggacggttc 67
Query: 81 ctttttgagtatc 93
||||||| |||||
Sbjct: 68 ctttttgggtatc 80
