miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00777;mir-541;ABRQ01054378.1/2639-2728 9813:Procavia capensis
(cape rock hyrax)
Length = 90
Score = 111 bits (56), Expect = 2e-24
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 12 gccaacgtcagggaaaggattctgctgtcggtcccactccaaagttcgaaacatgggtgg 71
||||| |||||| |||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1 gccaatgtcaggaaaaggattctgctgtcggtcccactccaaagttctcaaaatgggtgg 60
Query: 72 tgggcacagaatccgg 87
||||||||||||||||
Sbjct: 61 tgggcacagaatccgg 76
>RF00777;mir-541;AAEX02019639.1/168837-168928 9615:Canis lupus
familiaris (dog)
Length = 92
Score = 83.8 bits (42), Expect = 5e-16
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 20 cagggaaaggattctgctgtcggtcccactccaaagttcgaaacatgggtggtgggcaca 79
|||||| ||||||||||||| |||||||| |||||||||| || || |||||||||||||
Sbjct: 11 cagggagaggattctgctgtgggtcccaccccaaagttcgcaaaataggtggtgggcaca 70
Query: 80 gaatcc 85
||||||
Sbjct: 71 gaatcc 76
>RF00777;mir-541;AANN01107744.1/773-685 9365:Erinaceus europaeus
(western European hedgehog)
Length = 89
Score = 73.8 bits (37), Expect = 4e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 12 gccaacgtcagggaaaggattctgctgtcggtcccactcca 52
||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1 gccaaagtcagggaaaggattctgctgtcggtcccactcca 41
>RF00777;mir-541;ABRT010163758.1/2093-2182 9478:Tarsius syrichta
(Philippine tarsier)
Length = 90
Score = 67.9 bits (34), Expect = 3e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 12 gccaacgtcagggaaaggattctgctgtcggtcccactccaa 53
||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 1 gccaacgtcagagaaaggattctgctgttggtcccactccaa 42
>RF00777;mir-541;ABRP01151524.1/20247-20336 132908:Pteropus
vampyrus (large flying fox)
Length = 90
Score = 60.0 bits (30), Expect = 7e-09
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 16 acgtcagggaaaggattctgctgtcggtcccactccaaagttcgaaacatgggtggtggg 75
||||||||||| || |||||| |||||||||||| ||||||||| | |||| ||||||
Sbjct: 5 acgtcagggaaggggttctgccgtcggtcccactgcaaagttcgcagagtgggaggtggg 64
Query: 76 cacagaatcc 85
| ||||||||
Sbjct: 65 cgcagaatcc 74
>RF00777;mir-541;ABRR01339483.1/922-1007 30538:Lama pacos (alpaca)
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 12 gccaacgtcagggaaaggattctgctgtcggtccc 46
||||| |||||| ||||||||||| ||||||||||
Sbjct: 1 gccaatgtcaggaaaaggattctgttgtcggtccc 35
