miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRQ01054369.1/755-834 9813:Procavia capensis (cape
rock hyrax)
Length = 80
Score = 111 bits (56), Expect = 2e-24
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 33 cttaaggagaagttgcccgtgtctttttcgctttatatgtgacgaaacattcgcggtgca 92
||||| |||||||||||||||| ||||||||| || |||||||||||||||||||||||
Sbjct: 5 cttaatgagaagttgcccgtgtttttttcgctgaatctgtgacgaaacattcgcggtgca 64
Query: 93 cttctttttcagtatc 108
||||||||||||||||
Sbjct: 65 cttctttttcagtatc 80
>RF00641;mir-154;AAYZ01424897.1/234-313 9978:Ochotona princeps
(American pika)
Length = 80
Score = 105 bits (53), Expect = 1e-22
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 33 cttaaggagaagttgcccgtgtctttttcgctttatatgtgacgaaacattcgcggtgca 92
|||||||||||| ||||||||||||||||||| ||| || ||||||||||||||||||||
Sbjct: 5 cttaaggagaagctgcccgtgtctttttcgctgtatttgggacgaaacattcgcggtgca 64
Query: 93 cttctttttcagt 105
|||||| ||||||
Sbjct: 65 cttcttcttcagt 77
>RF00641;mir-154;AAIY01434920.1/105-183 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 79
Score = 69.9 bits (35), Expect = 7e-12
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 40 agaagttgcccgtgtctttttcgctttatatgtgacgaaacattcgcggtgcacttcttt 99
||||||||||| ||| ||||||||||||||||||||||||| | |||||||||||||
Sbjct: 11 agaagttgcccatgttattttcgctttatatgtgacgaaacaaacatggtgcacttcttt 70
Query: 100 ttc 102
|||
Sbjct: 71 ttc 73
>RF00641;mir-154;ABRQ01054369.1/2520-2599 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 58.0 bits (29), Expect = 3e-08
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 41 gaagttgcccgtgtctttttcgctttatatgtgacgaaacattcgcggtgcacttctttt 100
|||||||||| ||| ||||||||||||| ||||||||||| | ||||||||||||||
Sbjct: 13 gaagttgcccatgttcttttcgctttatacgtgacgaaacaaacatggtgcacttctttt 72
Query: 101 t 101
|
Sbjct: 73 t 73
>RF00641;mir-154;AAPY01359973.1/4034-4113 37347:Tupaia belangeri
(northern tree shrew)
Length = 80
Score = 56.0 bits (28), Expect = 1e-07
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 41 gaagttgcccgtgtctttttcgctttatatgtgacgaaacattcgcggtgcacttctttt 100
|||| ||||||||| |||||||||||| |||||||||||| | ||||||||||||||
Sbjct: 13 gaagctgcccgtgttattttcgctttatgtgtgacgaaacaaacatggtgcacttctttt 72
>RF00641;mir-154;AACN010421419.1/1043-964 9615:Canis lupus
familiaris (dog)
Length = 80
Score = 50.1 bits (25), Expect = 7e-06
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 40 agaagttgcccgtgtctttttcgctttatatgtgacgaaacattcgcggtgcacttcttt 99
||||||||||||||| ||||||||| ||| ||| ||||||| | |||||||||||||
Sbjct: 12 agaagttgcccgtgttattttcgcttgatacgtgccgaaacaaacatggtgcacttcttt 71
Query: 100 ttcagtatc 108
|| |||||
Sbjct: 72 ctcggtatc 80
