miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01922;mir-654;AAFC03087120.1/1102-999 9913:Bos taurus (cattle)
Length = 104
Score = 135 bits (68), Expect = 1e-31
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 2 agcccccaacctgggttagtggaaaggtggtgggctgcggagcatttgcttccttcgcgt 61
|||||||||||||||||||||||||||||||||||||| || ||| ||||||||||| ||
Sbjct: 1 agcccccaacctgggttagtggaaaggtggtgggctgcagaacatgtgcttccttcgtgt 60
Query: 62 catatgtctgctgaccatcacccttaga 89
|||||||||||||||||||||| |||||
Sbjct: 61 catatgtctgctgaccatcacctttaga 88
>RF01922;mir-654;AACN010101825.1/1897-2000 9615:Canis lupus
familiaris (dog)
Length = 104
Score = 56.0 bits (28), Expect = 9e-08
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 14 gggttagtggaaaggtggtgggctgcggagcatttgcttccttcgcgtcatatgtctgct 73
|||| |||| |||| |||||| | ||||| ||| |||||| |||| | |||||||||||
Sbjct: 13 gggtaagtgaaaagctggtggaccgcggaacatgtgcttcgttcgtgccatatgtctgcc 72
Query: 74 gaccatcacccttaga 89
|||||||||| |||||
Sbjct: 73 gaccatcacctttaga 88
>RF01922;mir-654;AANU01197805.1/78571-78674 9544:Macaca mulatta
(rhesus monkey)
Length = 104
Score = 56.0 bits (28), Expect = 9e-08
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 14 gggttagtggaaaggtggtgggctgcggagcatttgcttccttcgcgtcatatgtctgct 73
|||| ||||||||| |||||||| || || ||| |||| |||| | ||||||||||||
Sbjct: 13 gggtaagtggaaagatggtgggccgcagaacatgtgctgagttcgtgccatatgtctgct 72
Query: 74 gaccatcacccttaga 89
|||||||||| |||||
Sbjct: 73 gaccatcacctttaga 88
>RF01922;mir-654;AC121784.2/118742-118845 10090:Mus musculus
(house mouse)
Length = 104
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 60 gtcatatgtctgctgaccatcacc 83
||||||||||||||||||||||||
Sbjct: 59 gtcatatgtctgctgaccatcacc 82
>RF01922;mir-654;ABRO01197047.1/446-549 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 104
Score = 46.1 bits (23), Expect = 9e-05
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 13 tgggttagtggaaaggtggtgggctgcggagcatttgcttccttcgcgtcatatgtctgc 72
||||| || |||||| |||||||| || || ||| ||||| || | |||||||||||||
Sbjct: 12 tgggtaagcggaaagatggtgggccgcagaacatgtgcttgtttggtgtcatatgtctgc 71
Query: 73 tgaccatcacc 83
||||||||||
Sbjct: 72 cgaccatcacc 82
