miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00921;mir-665;ABRN01400944.1/724-814 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 91
Score = 115 bits (58), Expect = 1e-25
Identities = 79/86 (91%)
Strand = Plus / Plus
Query: 4 ggaggagggtctccttgaggggtcttggcctctgcccatgactctttcatgaccagtagg 63
||||||||||||||| |||||| ||| ||| ||||||| ||||||||||||||||| |||
Sbjct: 1 ggaggagggtctcctcgaggggccttagcccctgcccaggactctttcatgaccaggagg 60
Query: 64 ccgaggcccctcacaggcggctgctt 89
| ||||||||||||||||||||||||
Sbjct: 61 ctgaggcccctcacaggcggctgctt 86
>RF00921;mir-665;AACZ02151772.1/1457-1547 9598:Pan troglodytes
(chimpanzee)
Length = 91
Score = 115 bits (58), Expect = 1e-25
Identities = 82/90 (91%)
Strand = Plus / Plus
Query: 5 gaggagggtctccttgaggggtcttggcctctgcccatgactctttcatgaccagtaggc 64
|||||||||||||| ||||||||| |||||| |||| ||||||||||||||||| ||||
Sbjct: 2 gaggagggtctcctggaggggtctccgcctctacccaggactctttcatgaccaggaggc 61
Query: 65 cgaggcccctcacaggcggctgcttactct 94
|||||||||||||||||||| ||||||||
Sbjct: 62 tgaggcccctcacaggcggcttcttactct 91
>RF00921;mir-665;AAGU02593771.1/587-676 9785:Loxodonta africana
(African savanna elephant)
Length = 90
Score = 85.7 bits (43), Expect = 1e-16
Identities = 80/91 (87%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 4 ggaggagggtctccttgaggggtcttggcctctgcccatgactctttcatgaccagtagg 63
||||||||||||||||||||| || || |||| |||| ||||||| ||||||||| |||
Sbjct: 1 ggaggagggtctccttgagggacctcggtctctacccaggactctt-catgaccaggagg 59
Query: 64 ccgaggcccctcacaggcggctgcttactct 94
|||||||||||| |||||||| ||||||||
Sbjct: 60 ccgaggcccctctcaggcggcctcttactct 90
>RF00921;mir-665;AAKN02051948.1/11925-12015 10141:Cavia porcellus
(domestic guinea pig)
Length = 91
Score = 71.9 bits (36), Expect = 1e-12
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 9 agggtctccttgaggggtcttggcctctgcccatgactctttcatgaccagtaggccgag 68
||||||||||| |||||||| |||||| |||| |||| |||||||||||| |||| |||
Sbjct: 6 agggtctccttaaggggtctctgcctctacccaggactttttcatgaccaggaggctgag 65
Query: 69 gcccctcacaggcggc 84
|||| ||| |||||||
Sbjct: 66 gcccttcataggcggc 81
>RF00921;mir-665;AAYZ01391475.1/1433-1523 9978:Ochotona princeps
(American pika)
Length = 91
Score = 67.9 bits (34), Expect = 2e-11
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 4 ggaggagggtctccttgaggggtcttggcctctgcccatgactctttcatgaccagtagg 63
|||||||||||||||||||||| || |||||| |||| | ||| | ||||||| |||
Sbjct: 1 ggaggagggtctccttgaggggcctctgcctctccccagggctcctctgtgaccaggagg 60
Query: 64 ccgaggcccctcacaggcggct 85
| ||||||||||||||||||||
Sbjct: 61 ctgaggcccctcacaggcggct 82
>RF00921;mir-665;AANG01662487.1/2369-2453 9685:Felis catus
(domestic cat)
Length = 85
Score = 61.9 bits (31), Expect = 1e-09
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 20 gaggggtcttggcctctgcccatgactctttcatgaccagtaggccgaggcccctcacag 79
|||||||||| |||||| |||| | ||||||||||||||| |||| |||| |||||| |
Sbjct: 11 gaggggtcttagcctctacccagggctctttcatgaccaggaggctgaggaccctcatgg 70
Query: 80 gcggctgcttactct 94
||| |||| ||||||
Sbjct: 71 gcgactgcatactct 85
>RF00921;mir-665;AAQQ01350179.1/242-331 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 51 catgaccagtaggccgaggcccctcacaggcggctgcttactct 94
||||||||| |||| ||||||||||| ||||||| ||||||||
Sbjct: 47 catgaccaggaggcagaggcccctcataggcggcctcttactct 90
