miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRQ01054366.1/427-503 9813:Procavia capensis
(cape rock hyrax)
Length = 77
Score = 113 bits (57), Expect = 4e-25
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 12 ggtacatgaggtggttgaccagagagcacacacttcatttgtgccgtttgtgacctggtc 71
|||||||||| |||||||||||||||||||| ||| |||| || ||||||||||||||||
Sbjct: 1 ggtacatgagatggttgaccagagagcacacgctttatttatgacgtttgtgacctggtc 60
Query: 72 cactaaccctcagtatc 88
|||||||||||||||||
Sbjct: 61 cactaaccctcagtatc 77
>RF00641;mir-154;AAGU02503119.1/1083-1160 9785:Loxodonta africana
(African savanna elephant)
Length = 78
Score = 101 bits (51), Expect = 2e-21
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 18 tgaggtggttgaccagagagcacacacttcatttgtgccgtttgtgacctggtccactaa 77
|||| |||||||||||||||||||| ||| |||| || ||||||||||||||||||||||
Sbjct: 8 tgagatggttgaccagagagcacacgctttatttatgacgtttgtgacctggtccactaa 67
Query: 78 ccctcagtatc 88
|||||||||||
Sbjct: 68 ccctcagtatc 78
>RF00641;mir-154;AAYZ01216262.1/1115-1191 9978:Ochotona princeps
(American pika)
Length = 77
Score = 95.6 bits (48), Expect = 1e-19
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 18 tgaggtggttgaccagagagcacacacttcatttgtgccgtttgtgacctggtccactaa 77
||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
Sbjct: 7 tgaggtggttgaccagagagcacacgctgtatttgtgccgtttgtgacctggtccactga 66
Query: 78 ccctcagt 85
|||||||
Sbjct: 67 acctcagt 74
