miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00464;mir-92;CT033786.13/50148-50227 10090:Mus musculus (house
mouse)
Length = 80
Score = 113 bits (57), Expect = 3e-25
Identities = 75/80 (93%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 1 ctttctacacaggttgggatcggttgcaatgctgtgtttct--gtatggtattgcacttg 58
|||||||||||||||||||| || |||||||||||||||| |||||||||||||||||
Sbjct: 1 ctttctacacaggttgggatttgtcgcaatgctgtgtttctctgtatggtattgcacttg 60
Query: 59 tcccggcctgttgagtttgg 78
||||||||||||||||||||
Sbjct: 61 tcccggcctgttgagtttgg 80
>RF00464;mir-92;AAYZ01184872.1/1157-1234 9978:Ochotona princeps
(American pika)
Length = 78
Score = 107 bits (54), Expect = 2e-23
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 1 ctttctacacaggttgggatcggttgcaatgctgtgtttctgtatggtattgcacttgtc 60
|||||| |||||| ||||| |||| |||||||||||| ||||| ||||||||||||||||
Sbjct: 1 ctttctgcacaggctgggaccggtcgcaatgctgtgtgtctgtgtggtattgcacttgtc 60
Query: 61 ccggcctgttgagtttgg 78
||||||||||||||||||
Sbjct: 61 ccggcctgttgagtttgg 78
>RF00464;mir-92;AADN02029366.1/34887-34810 9031:Gallus gallus
(chicken)
Length = 78
Score = 99.6 bits (50), Expect = 5e-21
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 1 ctttctacacaggttgggatcggttgcaatgctgtgtttctgtatggtattgcacttgtc 60
||||||||||||||||||||| |||||||||||||| | | | ||||||||||||||||
Sbjct: 1 ctttctacacaggttgggatcagttgcaatgctgtgcgtttctgtggtattgcacttgtc 60
Query: 61 ccggcctgttgagtttgg 78
||||||||||||| ||||
Sbjct: 61 ccggcctgttgaggttgg 78
>RF00464;mir-92;ABRR01417027.1/760-838 30538:Lama pacos (alpaca)
Length = 79
Score = 97.6 bits (49), Expect = 2e-20
Identities = 68/73 (93%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 7 acacaggttgggatcggttgcaa-tgctgtgtttctgtatggtattgcacttgtcccggc 65
||||||||||||||||||||||| ||||||||| |||||||| ||| ||||||||||||
Sbjct: 7 acacaggttgggatcggttgcaaatgctgtgttcctgtatggagttgaacttgtcccggc 66
Query: 66 ctgttgagtttgg 78
|||||||||||||
Sbjct: 67 ctgttgagtttgg 79
>RF00464;mir-92;AAPN01258105.1/457-380 9258:Ornithorhynchus
anatinus (platypus)
Length = 78
Score = 65.9 bits (33), Expect = 7e-11
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 1 ctttctacacaggttgggatcggttgcaatgctgtgtttctgtatggtattgcacttgtc 60
||||||| |||||||||||| ||||||||||| ||||| | || ||||||| |||||
Sbjct: 1 ctttctatgcaggttgggatcagttgcaatgctttgtttgtctacagtattgcgcttgtt 60
Query: 61 ccggcctgttgag 73
|||||||||||||
Sbjct: 61 ccggcctgttgag 73
>RF00464;mir-92;AANN01710722.1/2155-2112 9365:Erinaceus europaeus
(western European hedgehog)
Length = 44
Score = 65.9 bits (33), Expect = 7e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 29 atgctgtgtttctgtatggtattgcacttgtcc 61
|||||||||||||||||||||||||||||||||
Sbjct: 12 atgctgtgtttctgtatggtattgcacttgtcc 44
>RF00464;mir-92;CAAK05029381.1/12544-12621 7955:Danio rerio
(zebrafish)
Length = 78
Score = 65.9 bits (33), Expect = 7e-11
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 1 ctttctacacaggttgggatcggttgcaatgctgtgtttctgtatggtattgcacttgtc 60
|||||| | ||||||||||| ||| |||||||||||| | | | |||||||||||||||
Sbjct: 1 ctttctgcgcaggttgggattggtagcaatgctgtgtgttttgaaggtattgcacttgtc 60
Query: 61 ccggcctgt 69
|||||||||
Sbjct: 61 ccggcctgt 69
>RF00464;mir-92;AANH01005312.1/95223-95146 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 78
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 tggtattgcacttgtcccggcctgttgag 73
|||||||||||||||||||||||||||||
Sbjct: 45 tggtattgcacttgtcccggcctgttgag 73
>RF00464;mir-92;BAAE01210639.1/1758-1680 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 tggtattgcacttgtcccggcctgttgag 73
|||||||||||||||||||||||||||||
Sbjct: 46 tggtattgcacttgtcccggcctgttgag 74
>RF00464;mir-92;AAPN01101011.1/3771-3698 9258:Ornithorhynchus
anatinus (platypus)
Length = 74
Score = 56.0 bits (28), Expect = 7e-08
Identities = 56/64 (87%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 10 caggttgggatcggttgcaatgctgtgtttctgtatggtattgcacttgtcccggcctgt 69
||||||| |||| |||||||||| ||||| | | |||||||||||||||||| ||||||
Sbjct: 10 caggttgagatcaattgcaatgctttgttt-tctgtggtattgcacttgtcccagcctgt 68
Query: 70 tgag 73
||||
Sbjct: 69 tgag 72
>RF00464;mir-92;AAPN01314920.1/824-749 9258:Ornithorhynchus
anatinus (platypus)
Length = 76
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 45 tggtattgcacttgtcccggcctgttgag 73
|||||||||||||||||| ||||||||||
Sbjct: 43 tggtattgcacttgtcccagcctgttgag 71
>RF00464;mir-92;CAAB01003114.1/24863-24787 31033:Takifugu rubripes
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 ggtattgcacttgtcccggcctgt 69
||||||||||||||||||||||||
Sbjct: 45 ggtattgcacttgtcccggcctgt 68
>RF00464;mir-92;CAAB01000095.1/4670-4593 31033:Takifugu rubripes
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 ggtattgcacttgtcccggcctgt 69
||||||||||||||||||||||||
Sbjct: 46 ggtattgcacttgtcccggcctgt 69
>RF00464;mir-92;AANH01000396.1/150776-150700 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 ggtattgcacttgtcccggcctgt 69
||||||||||||||||||||||||
Sbjct: 45 ggtattgcacttgtcccggcctgt 68
>RF00464;mir-92;BAAE01057416.1/1171-1095 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 ggtattgcacttgtcccggcctgt 69
||||||||||||||||||||||||
Sbjct: 45 ggtattgcacttgtcccggcctgt 68
>RF00464;mir-92;ABQO010442129.1/1114-1031 9315:Macropus eugenii
(tammar wallaby)
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 gtattgcacttgtcccggcctgt 69
|||||||||||||||||||||||
Sbjct: 53 gtattgcacttgtcccggcctgt 75
>RF00464;mir-92;AAFR03056382.1/2360-2443 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 gtattgcacttgtcccggcctgt 69
|||||||||||||||||||||||
Sbjct: 53 gtattgcacttgtcccggcctgt 75
>RF00464;mir-92;FP015951.3/28649-28570 9823:Sus scrofa (pig)
Length = 80
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 gtattgcacttgtcccggcctgt 69
|||||||||||||||||||||||
Sbjct: 49 gtattgcacttgtcccggcctgt 71
>RF00464;mir-92;ABDC01275774.1/2124-2045 30608:Microcebus murinus
(gray mouse lemur)
Length = 80
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 gtattgcacttgtcccggcctgt 69
|||||||||||||||||||||||
Sbjct: 49 gtattgcacttgtcccggcctgt 71
>RF00464;mir-92;AACZ02222074.1/3149-3227 9598:Pan troglodytes
(chimpanzee)
Length = 79
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 gtattgcacttgtcccggcctgt 69
|||||||||||||||||||||||
Sbjct: 48 gtattgcacttgtcccggcctgt 70
>RF00464;mir-92;AAGW01169230.1/2308-2388 9986:Oryctolagus
cuniculus (rabbit)
Length = 81
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 gtattgcacttgtcccggcctgt 69
|||||||||||||||||||||||
Sbjct: 50 gtattgcacttgtcccggcctgt 72
>RF00464;mir-92;AAIY01238597.1/3124-3045 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 80
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 gtattgcacttgtcccggcctgt 69
|||||||||||||||||||||||
Sbjct: 49 gtattgcacttgtcccggcctgt 71
>RF00464;mir-92;AAWZ01041388.1/1227-1308 28377:Anolis carolinensis
(green anole)
Length = 82
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 gtattgcacttgtcccggcctgt 69
|||||||||||||||||||||||
Sbjct: 51 gtattgcacttgtcccggcctgt 73
>RF00464;mir-92;ABQF01018395.1/1757-1837 59729:Taeniopygia guttata
Length = 81
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 gtattgcacttgtcccggcctgt 69
|||||||||||||||||||||||
Sbjct: 50 gtattgcacttgtcccggcctgt 72
>RF00464;mir-92;CAAK05051440.1/15632-15557 7955:Danio rerio
(zebrafish)
Length = 76
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 gtattgcacttgtcccggcctgt 69
|||||||||||||||||||||||
Sbjct: 45 gtattgcacttgtcccggcctgt 67
>RF00464;mir-92;AAPN01215107.1/8361-8434 9258:Ornithorhynchus
anatinus (platypus)
Length = 74
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 ctttctacacaggttgggatcggttgcaat 30
|||||||| |||||||||||| ||||||||
Sbjct: 1 ctttctacgcaggttgggatcagttgcaat 30
>RF00464;mir-92;AAPN01121175.1/4354-4275 9258:Ornithorhynchus
anatinus (platypus)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 48 tattgcacttgtcccggcctgttgag 73
|||||||||||||| |||||||||||
Sbjct: 50 tattgcacttgtcctggcctgttgag 75
>RF00464;mir-92;AAPN01282049.1/2229-2308 9258:Ornithorhynchus
anatinus (platypus)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 13 gttgggatcggttgcaatgctgtgtttctgtatggtattgcacttgtccc 62
|||||| || ||||| ||||| || || | ||||||||||||||||||||
Sbjct: 13 gttgggctcagttgcgatgctttgcttgtctatggtattgcacttgtccc 62
>RF00464;mir-92;AAHY01210291.1/5443-5364 10090:Mus musculus (house
mouse)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 gtattgcacttgtcccggcctg 68
||||||||||||||||||||||
Sbjct: 49 gtattgcacttgtcccggcctg 70
