miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00239;mir-124;AAIY01443585.1/551-630 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 80
Score = 159 bits (80), Expect = 9e-39
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 11 actctgccctccgtgttcacagcggaccttgatttaatgtcatacaattaaggcacgcgg 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 actctgccctccgtgttcacagcggaccttgatttaatgtcatacaattaaggcacgcgg 60
Query: 71 tgaatgccaagagcggagcc 90
||||||||||||||||||||
Sbjct: 61 tgaatgccaagagcggagcc 80
>RF00239;mir-124;AAWZ01017180.1/15233-15154 28377:Anolis
carolinensis (green anole)
Length = 80
Score = 135 bits (68), Expect = 1e-31
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 19 ctccgtgttcacagcggaccttgatttaatgtcatacaattaaggcacgcggtgaatgcc 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 ctccgtgttcacagcggaccttgatttaatgtcatacaattaaggcacgcggtgaatgcc 68
Query: 79 aagagcgg 86
||||||||
Sbjct: 69 aagagcgg 76
>RF00239;mir-124;BAAF04060426.1/3450-3529 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 121 bits (61), Expect = 2e-27
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 19 ctccgtgttcacagcggaccttgatttaatgtcatacaattaaggcacgcggtgaatgcc 78
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 9 ctccgtgttcacagcggaccttgatttaatgtcttacaattaaggcacgcggtgaatgcc 68
Query: 79 aagag 83
|||||
Sbjct: 69 aagag 73
>RF00239;mir-124;AAVX01582238.1/229-149 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 109 bits (55), Expect = 7e-24
Identities = 68/71 (95%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 14 ctgccctccgtgttcacagcggaccttgatttaatg-tcatacaattaaggcacgcggtg 72
|||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 4 ctgctctccgtgttcacagcggaccttgatttaatgtttatacaattaaggcacgcggtg 63
Query: 73 aatgccaagag 83
|||||||||||
Sbjct: 64 aatgccaagag 74
>RF00239;mir-124;BX511178.6/169756-169675 7955:Danio rerio
(zebrafish)
Length = 82
Score = 95.6 bits (48), Expect = 1e-19
Identities = 62/64 (96%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 22 cgtgttcacagcggaccttgatttaa-tgtc-atacaattaaggcacgcggtgaatgcca 79
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatgcca 71
Query: 80 agag 83
||||
Sbjct: 72 agag 75
>RF00239;mir-124;BAAF04105842.1/7834-7753 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 95.6 bits (48), Expect = 1e-19
Identities = 62/64 (96%), Gaps = 2/64 (3%)
Strand = Plus / Plus
Query: 22 cgtgttcacagcggaccttgatttaa-tgtc-atacaattaaggcacgcggtgaatgcca 79
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatgcca 71
Query: 80 agag 83
||||
Sbjct: 72 agag 75
>RF00239;mir-124;BX324109.8/64997-64917 7955:Danio rerio
(zebrafish)
Length = 81
Score = 93.7 bits (47), Expect = 4e-19
Identities = 60/63 (95%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 22 cgtgttcacagcggaccttgatttaatgtc-atacaattaaggcacgcggtgaatgccaa 80
||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacggcggaccttgatttaatatccatacaattaaggcacgcggtgaatgccaa 71
Query: 81 gag 83
|||
Sbjct: 72 gag 74
>RF00239;mir-124;AANH01003936.1/69725-69645 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 91.7 bits (46), Expect = 2e-18
Identities = 59/62 (95%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 23 gtgttcacagcggaccttgatttaatgtca-tacaattaaggcacgcggtgaatgccaag 81
|||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 13 gtgttcacagtggaccttgatttaatttcaatacaattaaggcacgcggtgaatgccaag 72
Query: 82 ag 83
||
Sbjct: 73 ag 74
>RF00239;mir-124;AAWZ01025406.1/2960-3041 28377:Anolis
carolinensis (green anole)
Length = 82
Score = 85.7 bits (43), Expect = 1e-16
Identities = 60/63 (95%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 22 cgtgttcacagcggaccttgatttaa-tgtc-atacaattaaggcacgcggtgaatgcca 79
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
Sbjct: 12 cgtgttcacagcggaccttgatttaaatgtccatacaattaaggcacgcggtgaatgcta 71
Query: 80 aga 82
|||
Sbjct: 72 aga 74
>RF00239;mir-124;AAWZ01041803.1/11566-11646 28377:Anolis
carolinensis (green anole)
Length = 81
Score = 83.8 bits (42), Expect = 4e-16
Identities = 64/70 (91%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 16 gccctccgtgttcacagcggaccttgatttaatgtc-atacaattaaggcacgcggtgaa 74
||||| ||||||||||| |||||||||||| |||| | |||||||||||||||||||||
Sbjct: 6 gcccttcgtgttcacagtggaccttgatttcatgtggacacaattaaggcacgcggtgaa 65
Query: 75 tgccaagagc 84
||||||||||
Sbjct: 66 tgccaagagc 75
>RF00239;mir-124;BX248497.11/64645-64566 7955:Danio rerio
(zebrafish)
Length = 80
Score = 77.8 bits (39), Expect = 3e-14
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 22 cgtgttcacagcggaccttgatttaatgtcatacaattaaggcacgcggtgaatgccaa 80
||||||||||| ||||||||||||| ||| | ||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacagtggaccttgatttattgtatttcaattaaggcacgcggtgaatgccaa 70
>RF00239;mir-124;AANH01002585.1/13981-13901 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 77.8 bits (39), Expect = 3e-14
Identities = 58/63 (92%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 22 cgtgttcacagcggaccttgatttaatgtca-tacaattaaggcacgcggtgaatgccaa 80
||||||||| ||||||||||||||| | || ||||||||||||||||||||||||||||
Sbjct: 12 cgtgttcacggcggaccttgatttattagcaatacaattaaggcacgcggtgaatgccaa 71
Query: 81 gag 83
|||
Sbjct: 72 gag 74
>RF00239;mir-124;AADN02043986.1/2081-2002 9031:Gallus gallus
(chicken)
Length = 80
Score = 75.8 bits (38), Expect = 1e-13
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 23 gtgttcacagcggaccttgatttaatgtcatacaattaaggcacgcggtgaatgccaa 80
|||||||| || |||||||||||||||||| || |||||||||||| |||||||||||
Sbjct: 13 gtgttcactgcagaccttgatttaatgtcacacgattaaggcacgcagtgaatgccaa 70
>RF00239;mir-124;BAAF04094312.1/9605-9526 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 65.9 bits (33), Expect = 1e-10
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 23 gtgttcacagcggaccttgatttaatgtcatacaattaaggcacgcggtgaatgccaaga 82
|||||||||| |||||||||||| | || ||||||||||||||||||||||||||||
Sbjct: 13 gtgttcacagtggaccttgatttcaaaacagtcaattaaggcacgcggtgaatgccaaga 72
Query: 83 g 83
|
Sbjct: 73 g 73
>RF00239;mir-124;AAVX01290765.1/186-107 7868:Callorhinchus milii
(ghost shark)
Length = 80
Score = 61.9 bits (31), Expect = 2e-09
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 23 gtgttcacagcggaccttgatttaatgtcatacaattaaggcacgcggtgaatgc 77
||||||| ||||| ||||||||||||| |||||||||||||| ||||||||||
Sbjct: 13 gtgttcatggcggatcttgatttaatgtggtacaattaaggcacacggtgaatgc 67
>RF00239;mir-124;BAAE01194669.1/2121-2201 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 54 acaattaaggcacgcggtgaatgccaagag 83
||||||||||||||||||||||||||||||
Sbjct: 45 acaattaaggcacgcggtgaatgccaagag 74
>RF00239;mir-124;AADK01010415.1/6990-7072 7091:Bombyx mori
(domestic silkworm)
Length = 83
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 59 taaggcacgcggtgaatgccaagagcgga 87
|||||||||||||||||||||||||||||
Sbjct: 52 taaggcacgcggtgaatgccaagagcgga 80
>RF00239;mir-124;AADG05004246.1/190424-190509 7460:Apis mellifera
(honey bee)
Length = 86
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 59 taaggcacgcggtgaatgccaagagcgga 87
|||||||||||||||||||||||||||||
Sbjct: 55 taaggcacgcggtgaatgccaagagcgga 83
>RF00239;mir-124;AAWU01000987.1/43993-44075 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 83
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 59 taaggcacgcggtgaatgccaagagcgga 87
|||||||||||||||||||||||||||||
Sbjct: 52 taaggcacgcggtgaatgccaagagcgga 80
>RF00239;mir-124;AAGJ02120869.1/14315-14397
7668:Strongylocentrotus purpuratus
Length = 83
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 54 acaattaaggcacgcggtgaatgccaag 81
||||||||||||||||||||||||||||
Sbjct: 46 acaattaaggcacgcggtgaatgccaag 73
>RF00239;mir-124;ABEP02005892.1/41262-41341 7739:Branchiostoma
floridae (Florida lancelet)
Length = 80
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 55 caattaaggcacgcggtgaatgccaaga 82
||||||||||||||||||||||||||||
Sbjct: 45 caattaaggcacgcggtgaatgccaaga 72
>RF00239;mir-124;ABGA01235197.1/1392-1331 9601:Pongo abelii
(Sumatran orangutan)
Length = 62
Score = 54.0 bits (27), Expect = 4e-07
Identities = 57/63 (90%), Gaps = 3/63 (4%)
Strand = Plus / Plus
Query: 20 tccgtgttcacagcggaccttgatttaa-tgtc-atacaattaaggcacgcggtgaatgc 77
|||||||||||||||| | |||||||| |||| ||||||| ||||||||||||||||||
Sbjct: 1 tccgtgttcacagcgggacctgatttaaatgtccatacaat-aaggcacgcggtgaatgc 59
Query: 78 caa 80
|||
Sbjct: 60 caa 62
>RF00239;mir-124;AAGE02000531.1/21424-21342 7159:Aedes aegypti
(yellow fever mosquito)
Length = 83
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 taaggcacgcggtgaatgccaagagcg 85
|||||||||||||||||||||||||||
Sbjct: 52 taaggcacgcggtgaatgccaagagcg 78
>RF00239;mir-124;AAPT01021775.1/703690-703766 7222:Drosophila
grimshawi
Length = 77
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 taaggcacgcggtgaatgccaagagcg 85
|||||||||||||||||||||||||||
Sbjct: 46 taaggcacgcggtgaatgccaagagcg 72
>RF00239;mir-124;AANI01016269.1/7414-7490 7244:Drosophila virilis
Length = 77
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 taaggcacgcggtgaatgccaagagcg 85
|||||||||||||||||||||||||||
Sbjct: 46 taaggcacgcggtgaatgccaagagcg 72
>RF00239;mir-124;AC189672.3/51235-51156 6334:Trichinella spiralis
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 56 aattaaggcacgcggtgaatgccaag 81
||||||||||||||||||||||||||
Sbjct: 46 aattaaggcacgcggtgaatgccaag 71
>RF00239;mir-124;AAZO01006175.1/169136-169059 121224:Pediculus
humanus corporis (human body louse)
Length = 78
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 59 taaggcacgcggtgaatgccaagagc 84
||||||||||||||||||||||||||
Sbjct: 47 taaggcacgcggtgaatgccaagagc 72
>RF00239;mir-124;AAJJ01000069.1/11639-11717 7070:Tribolium
castaneum (red flour beetle)
Length = 79
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 59 taaggcacgcggtgaatgccaagagc 84
||||||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaagagc 73
>RF00239;mir-124;ABKE01011138.1/1481-1398 54126:Pristionchus
pacificus
Length = 84
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 59 taaggcacgcggtgaatgccaagag 83
|||||||||||||||||||||||||
Sbjct: 53 taaggcacgcggtgaatgccaagag 77
>RF00239;mir-124;ABJB010184237.1/16835-16915 6945:Ixodes
scapularis (black-legged tick)
Length = 81
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 59 taaggcacgcggtgaatgccaagag 83
|||||||||||||||||||||||||
Sbjct: 50 taaggcacgcggtgaatgccaagag 74
>RF00239;mir-124;ABLF01025804.1/1243-1161 7029:Acyrthosiphon pisum
(pea aphid)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 taaggcacgcggtgaatgccaaga 82
||||||||||||||||||||||||
Sbjct: 52 taaggcacgcggtgaatgccaaga 75
>RF00239;mir-124;AAWT01083931.1/8247-8331 79327:Schmidtea
mediterranea
Length = 85
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 ttaaggcacgcggtgaatgcca 79
||||||||||||||||||||||
Sbjct: 53 ttaaggcacgcggtgaatgcca 74
>RF00239;mir-124;ABLA01036893.1/860-781 51029:Heterodera glycines
Length = 80
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 taaggcacgcggtgaatgccaa 80
||||||||||||||||||||||
Sbjct: 49 taaggcacgcggtgaatgccaa 70
>RF00239;mir-124;AACT01007791.1/10034-10112 51511:Ciona savignyi
Length = 79
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 taaggcacgcggtgaatgccaa 80
||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaa 69
>RF00239;mir-124;AACT01004897.1/11101-11179 51511:Ciona savignyi
Length = 79
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 taaggcacgcggtgaatgccaa 80
||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaa 69
>RF00239;mir-124;AABS01000310.1/18792-18714 7719:Ciona
intestinalis
Length = 79
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 taaggcacgcggtgaatgccaa 80
||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaa 69
>RF00239;mir-124;AABS01000310.1/18932-18854 7719:Ciona
intestinalis
Length = 79
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 taaggcacgcggtgaatgccaa 80
||||||||||||||||||||||
Sbjct: 48 taaggcacgcggtgaatgccaa 69
