miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00446;mir-133;ABRQ01222469.1/2189-2276 9813:Procavia capensis
(cape rock hyrax)
Length = 88
Score = 151 bits (76), Expect = 2e-36
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 1 cctgctctggctggtcaaacggaaccaagtccgtcttcctgagaggtttggtccccttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 cctgctctggctggtcaaacggaaccaagtccgtcttcctgagaggtttggtccccttca 65
Query: 61 accagctatagcagggctgg 80
|||||||| |||||||||||
Sbjct: 66 accagctacagcagggctgg 85
>RF00446;mir-133;AADN02018284.1/53-140 9031:Gallus gallus
(chicken)
Length = 88
Score = 113 bits (57), Expect = 3e-25
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 2 ctgctctggctggtcaaacggaaccaagtccgtcttcctgagaggtttggtccccttcaa 61
|||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||
Sbjct: 7 ctgctctggctggtcaaacggaaccaagcccgtcttcttcggaggtttggtccccttcaa 66
Query: 62 ccagctatagcag 74
|||||||||||||
Sbjct: 67 ccagctatagcag 79
>RF00446;mir-133;BAAF04047944.1/3038-2950 8090:Oryzias latipes
(Japanese medaka)
Length = 89
Score = 77.8 bits (39), Expect = 2e-14
Identities = 61/67 (91%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 3 tgctctggctggtcaaacggaaccaagtccg-tcttcctgagaggtttggtccccttcaa 61
|||| |||||||||||||||||||||||| | | || | |||||||||||||||||||||
Sbjct: 8 tgctgtggctggtcaaacggaaccaagtcaggtgtttcagagaggtttggtccccttcaa 67
Query: 62 ccagcta 68
|||||||
Sbjct: 68 ccagcta 74
>RF00446;mir-133;AAWZ01012531.1/25343-25256 28377:Anolis
carolinensis (green anole)
Length = 88
Score = 75.8 bits (38), Expect = 7e-14
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 1 cctgctctggctggtcaaacggaaccaagtccgtcttcctgagaggtttggtccccttca 60
||||||||||||||||||| ||||||| | | |||||||| ||||||||||||||| |
Sbjct: 6 cctgctctggctggtcaaagggaaccacggctgtcttccttgaaggtttggtccccttta 65
Query: 61 accagctatagcag 74
|||||||| |||||
Sbjct: 66 accagctacagcag 79
>RF00446;mir-133;AANH01006842.1/37352-37440 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 89
Score = 75.8 bits (38), Expect = 7e-14
Identities = 57/62 (91%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 8 tggctggtcaaacggaaccaagtccg-tcttcctgagaggtttggtccccttcaaccagc 66
|||||||||||||||||||||||| | | || ||| ||||||||||||||||||||||||
Sbjct: 13 tggctggtcaaacggaaccaagtcaggtgtttctgtgaggtttggtccccttcaaccagc 72
Query: 67 ta 68
||
Sbjct: 73 ta 74
>RF00446;mir-133;AACT01038735.1/1889-1809 51511:Ciona savignyi
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 45 ggtttggtccccttcaaccagcta 68
||||||||||||||||||||||||
Sbjct: 45 ggtttggtccccttcaaccagcta 68
>RF00446;mir-133;CAAK05040482.1/11317-11401 7955:Danio rerio
(zebrafish)
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 41 gagaggtttggtccccttcaaccagcta 68
||||||||||||||| ||||||||||||
Sbjct: 45 gagaggtttggtccctttcaaccagcta 72
>RF00446;mir-133;AAGE02024522.1/50344-50238 7159:Aedes aegypti
(yellow fever mosquito)
Length = 107
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 47 tttggtccccttcaaccagctatagcag 74
||||||||||||||||||||| ||||||
Sbjct: 71 tttggtccccttcaaccagctgtagcag 98
>RF00446;mir-133;ABKQ02016003.1/5336-5232 377270:Anopheles gambiae
S
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 47 tttggtccccttcaaccagctatagcag 74
||||||||||||||||||||| ||||||
Sbjct: 69 tttggtccccttcaaccagctgtagcag 96
>RF00446;mir-133;AAPP01015693.1/86515-86606 7217:Drosophila
ananassae
Length = 92
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 47 tttggtccccttcaaccagctatagcag 74
||||||||||||||||||||| ||||||
Sbjct: 56 tttggtccccttcaaccagctgtagcag 83
>RF00446;mir-133;AAQB01006401.1/332784-332872 7260:Drosophila
willistoni
Length = 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 47 tttggtccccttcaaccagctatagcag 74
||||||||||||||||||||| ||||||
Sbjct: 53 tttggtccccttcaaccagctgtagcag 80
>RF00446;mir-133;AAPT01020977.1/40333-40419 7222:Drosophila
grimshawi
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 47 tttggtccccttcaaccagctatagcag 74
||||||||||||||||||||| ||||||
Sbjct: 51 tttggtccccttcaaccagctgtagcag 78
>RF00446;mir-133;AAPU01010689.1/170290-170375 7230:Drosophila
mojavensis
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 47 tttggtccccttcaaccagctatagcag 74
||||||||||||||||||||| ||||||
Sbjct: 50 tttggtccccttcaaccagctgtagcag 77
>RF00446;mir-133;AABS01000844.1/21320-21411 7719:Ciona
intestinalis
Length = 92
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 45 ggtttggtccccttcaaccagct 67
|||||||||||||||||||||||
Sbjct: 54 ggtttggtccccttcaaccagct 76
>RF00446;mir-133;AAQA01000068.1/106410-106501 6279:Brugia malayi
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 48 ttggtccccttcaaccagctat 69
||||||||||||||||||||||
Sbjct: 57 ttggtccccttcaaccagctat 78
>RF00446;mir-133;AAQQ01431588.1/1752-1838 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 47 tttggtccccttcaaccagctatagc 72
||||||||||||||||||||| ||||
Sbjct: 51 tttggtccccttcaaccagctgtagc 76
>RF00446;mir-133;AAIY01559715.1/853-939 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 47 tttggtccccttcaaccagctatagc 72
||||||||||||||||||||| ||||
Sbjct: 51 tttggtccccttcaaccagctgtagc 76
>RF00446;mir-133;AAVX01020289.1/2798-2712 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 47 tttggtccccttcaaccagctatagc 72
||||||||||||||||||||| ||||
Sbjct: 51 tttggtccccttcaaccagctgtagc 76
>RF00446;mir-133;AAVX01266048.1/613-699 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 47 tttggtccccttcaaccagctatagc 72
||||||||||||||||||||| ||||
Sbjct: 51 tttggtccccttcaaccagctgtagc 76
>RF00446;mir-133;ABLF01021874.1/5675-5746 7029:Acyrthosiphon pisum
(pea aphid)
Length = 72
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 47 tttggtccccttcaaccagctatagc 72
||||||||||||||||||||| ||||
Sbjct: 36 tttggtccccttcaaccagctgtagc 61
>RF00446;mir-133;AASW01052175.1/117-202 7240:Drosophila simulans
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 47 tttggtccccttcaaccagctatagc 72
||||||||||||||||||||| ||||
Sbjct: 50 tttggtccccttcaaccagctgtagc 75
