miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00678;mir-140;AADN02054178.1/9586-9683 9031:Gallus gallus
          (chicken)
          Length = 98

 Score =  133 bits (67), Expect = 3e-31
 Identities = 67/67 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  cctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaac 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 cctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaac 75

                 
Query: 61 cacggac 67
          |||||||
Sbjct: 76 cacggac 82




>RF00678;mir-140;AAVX01038725.1/2937-3034 7868:Callorhinchus milii
          (ghost shark)
          Length = 98

 Score =  131 bits (66), Expect = 1e-30
 Identities = 66/66 (100%)
 Strand = Plus / Plus

                                                                      
Query: 5  ccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacg 64
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20 ccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacg 79

                
Query: 65 gacagg 70
          ||||||
Sbjct: 80 gacagg 85




>RF00678;mir-140;ABRO01131757.1/4897-4800 10020:Dipodomys ordii
          (Ord's kangaroo rat)
          Length = 98

 Score =  121 bits (61), Expect = 1e-27
 Identities = 64/65 (98%)
 Strand = Plus / Plus

                                                                      
Query: 6  cagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacgg 65
          ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 21 cagtggttttaccctatggtaggttacatcatgctgttctaccacagggtagaaccacgg 80

               
Query: 66 acagg 70
          |||||
Sbjct: 81 acagg 85




>RF00678;mir-140;BAAF04008549.1/880-978 8090:Oryzias latipes
          (Japanese medaka)
          Length = 99

 Score =  107 bits (54), Expect = 2e-23
 Identities = 60/62 (96%)
 Strand = Plus / Plus

                                                                      
Query: 6  cagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacgg 65
          |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 22 cagtggttttaccctatggtaggtgacatcatgctgttctaccacagggtagaaccacgg 81

            
Query: 66 ac 67
          ||
Sbjct: 82 ac 83