miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01896;mir-142;AAGW01608371.1/689-584 9986:Oryctolagus cuniculus
(rabbit)
Length = 106
Score = 159 bits (80), Expect = 6e-39
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 1 gtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtttcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 gtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtttcct 73
Query: 61 actttatggatgagtgtact 80
||||||||||||||||||||
Sbjct: 74 actttatggatgagtgtact 93
>RF01896;mir-142;M31826.1/156-256 9606:Homo sapiens (human)
Length = 101
Score = 145 bits (73), Expect = 1e-34
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1 gtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtttcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 gtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtttcct 73
Query: 61 actttatggatga 73
|||||||||||||
Sbjct: 74 actttatggatga 86
>RF01896;mir-142;AADN02026096.1/1575-1681 9031:Gallus gallus
(chicken)
Length = 107
Score = 137 bits (69), Expect = 2e-32
Identities = 79/81 (97%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 gtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtttcc 59
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 14 gtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcc 73
Query: 60 tactttatggatgagtgtact 80
|||||||||||||||||||||
Sbjct: 74 tactttatggatgagtgtact 94
>RF01896;mir-142;BAAF04037757.1/8225-8119 8090:Oryzias latipes
(Japanese medaka)
Length = 107
Score = 77.8 bits (39), Expect = 2e-14
Identities = 64/71 (90%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 6 gtcacccataaagtagaaagcactact-aacagcactggagggtgtagtgtttcctactt 64
||||||||||||||||||||||||||| ||| |||| | ||||||||||||||||||
Sbjct: 19 gtcacccataaagtagaaagcactactaaacttcactatacagtgtagtgtttcctactt 78
Query: 65 tatggatgagt 75
|||||||||||
Sbjct: 79 tatggatgagt 89
>RF01896;mir-142;CU633486.9/28311-28205 7955:Danio rerio
(zebrafish)
Length = 107
Score = 73.8 bits (37), Expect = 3e-13
Identities = 71/81 (87%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 gtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtttcc 59
|||||||||| ||||||||||| ||||||||||| | | || | |||||||||||||
Sbjct: 14 gtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtttcc 73
Query: 60 tactttatggatgagtgtact 80
|||||||||||||||||||||
Sbjct: 74 tactttatggatgagtgtact 94
>RF01896;mir-142;BAAE01037208.1/1195-1089 8090:Oryzias latipes
(Japanese medaka)
Length = 107
Score = 73.8 bits (37), Expect = 3e-13
Identities = 71/81 (87%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 gtgcagtcacccataaagtagaaagcactactaacagcactgg-agggtgtagtgtttcc 59
||||||||| |||||||||||||||||||||||| | || | |||||||||||||
Sbjct: 14 gtgcagtcatccataaagtagaaagcactactaaactccttgccaaagtgtagtgtttcc 73
Query: 60 tactttatggatgagtgtact 80
|||||||||||||||||||||
Sbjct: 74 tactttatggatgagtgtact 94
>RF01896;mir-142;AAWZ01023107.1/41327-41220 28377:Anolis
carolinensis (green anole)
Length = 108
Score = 67.9 bits (34), Expect = 2e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 47 gtgtagtgtttcctactttatggatgagtgtact 80
||||||||||||||||||||||||||||||||||
Sbjct: 62 gtgtagtgtttcctactttatggatgagtgtact 95
>RF01896;mir-142;AAVX01306460.1/1282-1378 7868:Callorhinchus milii
(ghost shark)
Length = 97
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1 gtgcagtcacccataaagtagaaagcactactaac 35
||||||||| |||||||||||||||||||||||||
Sbjct: 14 gtgcagtcatccataaagtagaaagcactactaac 48
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 47 gtgtagtgtttcctactttatggatgagtg 76
|||||||||||||||||||||||| |||||
Sbjct: 59 gtgtagtgtttcctactttatggacgagtg 88
