miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF01896;mir-142;AAGW01608371.1/689-584 9986:Oryctolagus cuniculus
          (rabbit)
          Length = 106

 Score =  159 bits (80), Expect = 6e-39
 Identities = 80/80 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtttcct 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 gtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtttcct 73

                              
Query: 61 actttatggatgagtgtact 80
          ||||||||||||||||||||
Sbjct: 74 actttatggatgagtgtact 93




>RF01896;mir-142;M31826.1/156-256 9606:Homo sapiens (human)
          Length = 101

 Score =  145 bits (73), Expect = 1e-34
 Identities = 73/73 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtttcct 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 gtgcagtcacccataaagtagaaagcactactaacagcactggagggtgtagtgtttcct 73

                       
Query: 61 actttatggatga 73
          |||||||||||||
Sbjct: 74 actttatggatga 86




>RF01896;mir-142;AADN02026096.1/1575-1681 9031:Gallus gallus
          (chicken)
          Length = 107

 Score =  137 bits (69), Expect = 2e-32
 Identities = 79/81 (97%), Gaps = 1/81 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  gtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtttcc 59
          |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 14 gtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcc 73

                               
Query: 60 tactttatggatgagtgtact 80
          |||||||||||||||||||||
Sbjct: 74 tactttatggatgagtgtact 94




>RF01896;mir-142;BAAF04037757.1/8225-8119 8090:Oryzias latipes
          (Japanese medaka)
          Length = 107

 Score = 77.8 bits (39), Expect = 2e-14
 Identities = 64/71 (90%), Gaps = 1/71 (1%)
 Strand = Plus / Plus

                                                                      
Query: 6  gtcacccataaagtagaaagcactact-aacagcactggagggtgtagtgtttcctactt 64
          ||||||||||||||||||||||||||| |||  ||||  |  ||||||||||||||||||
Sbjct: 19 gtcacccataaagtagaaagcactactaaacttcactatacagtgtagtgtttcctactt 78

                     
Query: 65 tatggatgagt 75
          |||||||||||
Sbjct: 79 tatggatgagt 89




>RF01896;mir-142;CU633486.9/28311-28205 7955:Danio rerio
          (zebrafish)
          Length = 107

 Score = 73.8 bits (37), Expect = 3e-13
 Identities = 71/81 (87%), Gaps = 1/81 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  gtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtttcc 59
          |||||||||| ||||||||||| ||||||||||| |  | ||  |  |||||||||||||
Sbjct: 14 gtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtttcc 73

                               
Query: 60 tactttatggatgagtgtact 80
          |||||||||||||||||||||
Sbjct: 74 tactttatggatgagtgtact 94




>RF01896;mir-142;BAAE01037208.1/1195-1089 8090:Oryzias latipes
          (Japanese medaka)
          Length = 107

 Score = 73.8 bits (37), Expect = 3e-13
 Identities = 71/81 (87%), Gaps = 1/81 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  gtgcagtcacccataaagtagaaagcactactaacagcactgg-agggtgtagtgtttcc 59
          ||||||||| ||||||||||||||||||||||||   |  ||  |  |||||||||||||
Sbjct: 14 gtgcagtcatccataaagtagaaagcactactaaactccttgccaaagtgtagtgtttcc 73

                               
Query: 60 tactttatggatgagtgtact 80
          |||||||||||||||||||||
Sbjct: 74 tactttatggatgagtgtact 94




>RF01896;mir-142;AAWZ01023107.1/41327-41220 28377:Anolis
          carolinensis (green anole)
          Length = 108

 Score = 67.9 bits (34), Expect = 2e-11
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                            
Query: 47 gtgtagtgtttcctactttatggatgagtgtact 80
          ||||||||||||||||||||||||||||||||||
Sbjct: 62 gtgtagtgtttcctactttatggatgagtgtact 95




>RF01896;mir-142;AAVX01306460.1/1282-1378 7868:Callorhinchus milii
          (ghost shark)
          Length = 97

 Score = 61.9 bits (31), Expect = 1e-09
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                             
Query: 1  gtgcagtcacccataaagtagaaagcactactaac 35
          ||||||||| |||||||||||||||||||||||||
Sbjct: 14 gtgcagtcatccataaagtagaaagcactactaac 48



 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 47 gtgtagtgtttcctactttatggatgagtg 76
          |||||||||||||||||||||||| |||||
Sbjct: 59 gtgtagtgtttcctactttatggacgagtg 88