miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00683;mir-143;AAGW01160071.1/967-862 9986:Oryctolagus cuniculus
(rabbit)
Length = 106
Score = 135 bits (68), Expect = 9e-32
Identities = 74/76 (97%)
Strand = Plus / Plus
Query: 5 cccagccggaggtgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgt 64
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 17 cccagcctgaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgt 76
Query: 65 agctcgggaagggaga 80
||||||||||||||||
Sbjct: 77 agctcgggaagggaga 92
>RF00683;mir-143;AAIY01705731.1/1779-1674 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 106
Score = 135 bits (68), Expect = 9e-32
Identities = 74/76 (97%)
Strand = Plus / Plus
Query: 5 cccagccggaggtgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgt 64
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 17 cccagcctgaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgt 76
Query: 65 agctcgggaagggaga 80
||||||||||||||||
Sbjct: 77 agctcgggaagggaga 92
>RF00683;mir-143;AC148011.3/33883-33988 10090:Mus musculus (house
mouse)
Length = 106
Score = 127 bits (64), Expect = 2e-29
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 5 cccagccggaggtgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgt 64
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 17 cccagcctgaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgt 76
Query: 65 agctcgggaagggaga 80
||||| ||||||||||
Sbjct: 77 agctcaggaagggaga 92
>RF00683;mir-143;AAFR03012464.1/24867-24972 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 106
Score = 125 bits (63), Expect = 9e-29
Identities = 72/75 (96%)
Strand = Plus / Plus
Query: 5 cccagccggaggtgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgt 64
||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 17 cccagcccgaggtgcagtgctgcatctctggtcagttgtgagtctgagatgaagcactgt 76
Query: 65 agctcgggaagggag 79
|||||||||||||||
Sbjct: 77 agctcgggaagggag 91
>RF00683;mir-143;AAPE01221912.1/1898-1793 59463:Myotis lucifugus
(little brown bat)
Length = 106
Score = 119 bits (60), Expect = 5e-27
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 13 gaggtgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgtagctcggg 72
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 25 gaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctcagg 84
Query: 73 aagggaga 80
||||||||
Sbjct: 85 aagggaga 92
>RF00683;mir-143;AAPN01425211.1/1518-1413 9258:Ornithorhynchus
anatinus (platypus)
Length = 106
Score = 117 bits (59), Expect = 2e-26
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 5 cccagccggaggtgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgt 64
||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 17 cccagcccaaggtgcagtgctgcatctctggtcagttgtgagtctgagatgaagcactgt 76
Query: 65 agctcgggaagggag 79
|||||||||||||||
Sbjct: 77 agctcgggaagggag 91
>RF00683;mir-143;AALT01067568.1/1202-1307 42254:Sorex araneus
(European shrew)
Length = 106
Score = 117 bits (59), Expect = 2e-26
Identities = 62/63 (98%)
Strand = Plus / Plus
Query: 15 ggtgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgtagctcgggaa 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 27 ggtgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgtagctcaggaa 86
Query: 75 ggg 77
|||
Sbjct: 87 ggg 89
>RF00683;mir-143;AAWZ01000591.1/16242-16347 28377:Anolis
carolinensis (green anole)
Length = 106
Score = 117 bits (59), Expect = 2e-26
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 5 cccagccggaggtgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgt 64
||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 17 cccagcccaaggtgcagtgctgcatctctggtcagttgtgagtctgagatgaagcactgt 76
Query: 65 agctcgggaagggag 79
|||||||||||||||
Sbjct: 77 agctcgggaagggag 91
>RF00683;mir-143;CU234179.11/36731-36626 7955:Danio rerio
(zebrafish)
Length = 106
Score = 109 bits (55), Expect = 5e-24
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 15 ggtgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgtagctcggga 73
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 27 ggtgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtagctcggga 85
>RF00683;mir-143;CAAB01002152.1/24278-24172 31033:Takifugu
rubripes
Length = 107
Score = 101 bits (51), Expect = 1e-21
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 15 ggtgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgtagctcggga 73
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 27 ggtgcagtgctgcatctctggtcagttggtagtctgagatgaagcactgtagctcggga 85
>RF00683;mir-143;ABPL01011624.1/1446-1341 27751:Melanochromis
auratus
Length = 106
Score = 101 bits (51), Expect = 1e-21
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 15 ggtgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgtagctcggga 73
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 27 ggtgcagtgctgcatctctggtcagttggtagtctgagatgaagcactgtagctcggga 85
>RF00683;mir-143;AANH01007327.1/1417-1521 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 105
Score = 101 bits (51), Expect = 1e-21
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 15 ggtgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgtagctcggga 73
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 27 ggtgcagtgctgcatctctggtcagttggtagtctgagatgaagcactgtagctcggga 85
>RF00683;mir-143;BAAE01019938.1/1252-1147 8090:Oryzias latipes
(Japanese medaka)
Length = 106
Score = 93.7 bits (47), Expect = 3e-19
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 15 ggtgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgtagctcggga 73
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 27 ggtgcagtgctgcatctctggtcagttgatagtctgagatgaagcactgtagctcggga 85
>RF00683;mir-143;AAVX01064725.1/2024-2127 7868:Callorhinchus milii
(ghost shark)
Length = 104
Score = 93.7 bits (47), Expect = 3e-19
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 7 cagccggaggtgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgtag 66
||||| |||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct: 19 cagccagaggtgcagtgctgcatctctggttagttgtgagtctgagatgaagcactgtag 78
Query: 67 ctc 69
|||
Sbjct: 79 ctc 81
