miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00731;mir-155;AADN02010688.1/48715-48779 9031:Gallus gallus
(chicken)
Length = 65
Score = 93.7 bits (47), Expect = 3e-19
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 9 tgttaatgctaattgtgataggggtttttacctccgtctgactcctacatgttagcatta 68
||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 2 tgttaatgctaatcgtgataggggtttttacctctgaatgactcctacatgttagcatta 61
Query: 69 aca 71
|||
Sbjct: 62 aca 64
>RF00731;mir-155;AY096003.1/159-223 10090:Mus musculus (house
mouse)
Length = 65
Score = 89.7 bits (45), Expect = 5e-18
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 8 ctgttaatgctaattgtgataggggtttttacctccgtctgactcctacatgttagcatt 67
||||||||||||||||||||||||||||| |||| | ||||||||||| ||||||||||
Sbjct: 1 ctgttaatgctaattgtgataggggttttggcctctgactgactcctacctgttagcatt 60
Query: 68 aacag 72
|||||
Sbjct: 61 aacag 65
>RF00731;mir-155;AAGU02298634.1/113-176 9785:Loxodonta africana
(African savanna elephant)
Length = 64
Score = 73.8 bits (37), Expect = 3e-13
Identities = 59/65 (90%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 8 ctgttaatgctaattgtgataggggtttttacctccgtctgactcctacatgttagcatt 67
|||||||||||||| |||||||||||||||||||| | |||||||||||||||||||
Sbjct: 1 ctgttaatgctaatcgtgataggggtttttacctcaagc-aactcctacatgttagcatt 59
Query: 68 aacag 72
|||||
Sbjct: 60 aacag 64
>RF00731;mir-155;ABRQ01311671.1/11595-11658 9813:Procavia capensis
(cape rock hyrax)
Length = 64
Score = 67.9 bits (34), Expect = 2e-11
Identities = 53/58 (91%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 11 ttaatgctaattgtgataggggtttttacctccgtctgactcctacatgttagcatta 68
||||||||||| ||||||||||||||| ||| | |||||||||||||||||||||||
Sbjct: 4 ttaatgctaatcgtgataggggtttttgcct-caactgactcctacatgttagcatta 60
>RF00731;mir-155;AAFR03036553.1/2910-2839 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 72
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 ctgactcctacatgttagcattaacag 72
|||||||||||||||||||||||||||
Sbjct: 46 ctgactcctacatgttagcattaacag 72
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 9 tgttaatgctaattgtgataggggttttt 37
||||||||||||| |||||||||||||||
Sbjct: 2 tgttaatgctaatcgtgataggggttttt 30
>RF00731;mir-155;AAWZ01036341.1/34181-34117 28377:Anolis
carolinensis (green anole)
Length = 65
Score = 50.1 bits (25), Expect = 4e-06
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 11 ttaatgctaattgtgataggggtttttacctccgtctgactcctacatgttagcatt 67
||||||||||| ||||| || |||||| ||| | |||||||||||||||| |||||
Sbjct: 4 ttaatgctaatcgtgatgggagtttttgtctctggctgactcctacatgttggcatt 60
>RF00731;mir-155;AANH01000396.1/166544-166481 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 64
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 gttaatgctaattgtgataggggttttt 37
|||||||||||| |||||||||||||||
Sbjct: 3 gttaatgctaatcgtgataggggttttt 30
>RF00731;mir-155;AAVX01187381.1/1334-1270 7868:Callorhinchus milii
(ghost shark)
Length = 65
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ttaatgctaattgtgataggggtt 34
||||||||||||||||||||||||
Sbjct: 4 ttaatgctaattgtgataggggtt 27
>RF00731;mir-155;AAPN01114009.1/559-624 9258:Ornithorhynchus
anatinus (platypus)
Length = 66
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 gttaatgctaattgtgataggggtttt 36
|||||||||||| ||||||||||||||
Sbjct: 3 gttaatgctaatcgtgataggggtttt 29
>RF00731;mir-155;BAAE01057424.1/197-134 8090:Oryzias latipes
(Japanese medaka)
Length = 64
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 tgttaatgctaattgtgataggggtt 34
||||||||||||| ||||||||||||
Sbjct: 2 tgttaatgctaatcgtgataggggtt 27
