miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26773_cfa-mir-214:mirbase
Length = 110
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 ggcctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggcctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcc 60
Query: 61 gctcacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctcacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>33290_bta-mir-214:mirbase
Length = 110
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 ggcctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggcctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcc 60
Query: 61 gctcacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctcacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>27519_age-mir-214:mirbase
Length = 110
Score = 210 bits (106), Expect = 2e-55
Identities = 109/110 (99%)
Strand = Plus / Plus
Query: 1 ggcctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcc 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggcctggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcc 60
Query: 61 gctcacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctcacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>27625_sla-mir-214:mirbase
Length = 110
Score = 210 bits (106), Expect = 2e-55
Identities = 109/110 (99%)
Strand = Plus / Plus
Query: 1 ggcctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcc 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggcctggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcc 60
Query: 61 gctcacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctcacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>27809_mml-mir-214:mirbase
Length = 110
Score = 210 bits (106), Expect = 2e-55
Identities = 109/110 (99%)
Strand = Plus / Plus
Query: 1 ggcctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcc 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggcctggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcc 60
Query: 61 gctcacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctcacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>28236_mne-mir-214:mirbase
Length = 110
Score = 210 bits (106), Expect = 2e-55
Identities = 109/110 (99%)
Strand = Plus / Plus
Query: 1 ggcctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcc 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggcctggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcc 60
Query: 61 gctcacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctcacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>28330_ggo-mir-214:mirbase
Length = 110
Score = 210 bits (106), Expect = 2e-55
Identities = 109/110 (99%)
Strand = Plus / Plus
Query: 1 ggcctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcc 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggcctggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcc 60
Query: 61 gctcacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctcacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>28531_hsa-mir-214:mirbase
Length = 110
Score = 210 bits (106), Expect = 2e-55
Identities = 109/110 (99%)
Strand = Plus / Plus
Query: 1 ggcctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcc 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggcctggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcc 60
Query: 61 gctcacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctcacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>30118_ppa-mir-214:mirbase
Length = 110
Score = 210 bits (106), Expect = 2e-55
Identities = 109/110 (99%)
Strand = Plus / Plus
Query: 1 ggcctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcc 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggcctggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcc 60
Query: 61 gctcacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctcacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>30289_ptr-mir-214:mirbase
Length = 110
Score = 210 bits (106), Expect = 2e-55
Identities = 109/110 (99%)
Strand = Plus / Plus
Query: 1 ggcctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcc 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggcctggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcc 60
Query: 61 gctcacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctcacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>30907_ppy-mir-214:mirbase
Length = 110
Score = 210 bits (106), Expect = 2e-55
Identities = 109/110 (99%)
Strand = Plus / Plus
Query: 1 ggcctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcc 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggcctggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcc 60
Query: 61 gctcacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctcacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>31941_mmu-mir-214:mirbase
Length = 110
Score = 210 bits (106), Expect = 2e-55
Identities = 109/110 (99%)
Strand = Plus / Plus
Query: 1 ggcctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcc 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggcctggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcc 60
Query: 61 gctcacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctcacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>27428_mdo-mir-214:mirbase
Length = 110
Score = 204 bits (103), Expect = 1e-53
Identities = 106/107 (99%)
Strand = Plus / Plus
Query: 4 ctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4 ctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctct 63
Query: 64 cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>32804_rno-mir-214:mirbase
Length = 110
Score = 198 bits (100), Expect = 6e-52
Identities = 106/108 (98%)
Strand = Plus / Plus
Query: 3 cctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgc 62
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 cctggatggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgc 62
Query: 63 tcacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 tcacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>31534_oan-mir-214:mirbase
Length = 118
Score = 196 bits (99), Expect = 2e-51
Identities = 105/107 (98%)
Strand = Plus / Plus
Query: 4 ctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgct 63
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 6 ctggctggacggagttgtcacgtgtctgcctgtctacacttgctgtgcagaacatcctct 65
Query: 64 cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 112
>25833_xtr-mir-214:mirbase
Length = 107
Score = 194 bits (98), Expect = 9e-51
Identities = 104/106 (98%)
Strand = Plus / Plus
Query: 5 tggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctc 64
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 2 tggctggaaggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctc 61
Query: 65 acctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 acctgtacagcaggcacagacaggcagtcacatgacaacccagcct 107
>33026_rno-mir-3120:mirbase
Length = 117
Score = 194 bits (98), Expect = 9e-51
Identities = 101/102 (99%)
Strand = Plus / Minus
Query: 9 tggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacct 68
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 tggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacct 54
Query: 69 gtacagcaggcacagacaggcagtcacatgacaacccagcct 110
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 gtacagcaggcacagacaggcagtcacatgacaacccagcct 12
>26509_tgu-mir-214:mirbase
Length = 92
Score = 167 bits (84), Expect = 2e-42
Identities = 90/92 (97%)
Strand = Plus / Plus
Query: 11 gacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgt 70
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1 gacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctctcacctgt 60
Query: 71 acagcaggcacagacaggcagtcacatgacaa 102
||||||||||||||||||||||| ||||||||
Sbjct: 61 acagcaggcacagacaggcagtcgcatgacaa 92
>29245_hsa-mir-3120:mirbase
Length = 81
Score = 161 bits (81), Expect = 1e-40
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 20 gtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggc 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 gtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggc 22
Query: 80 acagacaggcagtcacatgac 100
|||||||||||||||||||||
Sbjct: 21 acagacaggcagtcacatgac 1
>29246_hsa-mir-3120:mirbase
Length = 81
Score = 161 bits (81), Expect = 1e-40
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 20 gtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggc 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 gtcatgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggc 22
Query: 80 acagacaggcagtcacatgac 100
|||||||||||||||||||||
Sbjct: 21 acagacaggcagtcacatgac 1
>26001_gga-mir-214:mirbase
Length = 110
Score = 141 bits (71), Expect = 1e-34
Identities = 98/107 (91%)
Strand = Plus / Plus
Query: 4 ctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgct 63
||||||| ||||||||||||||||||| ||||||||||||||||| || ||||||| ||
Sbjct: 4 ctggctgttcggagttgtcatgtgtctgtctgtctacacttgctgtccataacatccact 63
Query: 64 cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
|||||||||||| || |||||||||||||||| ||||||||||||||
Sbjct: 64 cacctgtacagcgggaacagacaggcagtcacctgacaacccagcct 110
>27097_eca-mir-214:mirbase
Length = 65
Score = 129 bits (65), Expect = 5e-31
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 28 tctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacagacag 87
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacagacag 60
Query: 88 gcagt 92
|||||
Sbjct: 61 gcagt 65
>34368_dre-mir-214:mirbase
Length = 100
Score = 91.7 bits (46), Expect = 1e-19
Identities = 62/66 (93%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 26 tgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacagac 85
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 18 tgtctgcctgtctacacttgctgtgcagaacttcc-tgcacctgtacagcaggcacagac 76
Query: 86 aggcag 91
||||||
Sbjct: 77 aggcag 82
>34636_fru-mir-214:mirbase
Length = 99
Score = 89.7 bits (45), Expect = 4e-19
Identities = 63/68 (92%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 24 tgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacag 83
||||||||||||||||||||||||||||||| | || ||| ||||||||||||||||||
Sbjct: 20 tgtgtctgcctgtctacacttgctgtgcagaccttctgct--cctgtacagcaggcacag 77
Query: 84 acaggcag 91
||||||||
Sbjct: 78 acaggcag 85
>34784_tni-mir-214:mirbase
Length = 88
Score = 89.7 bits (45), Expect = 4e-19
Identities = 63/68 (92%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 24 tgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacag 83
||||||||||||||||||||||||||||||| | || ||| ||||||||||||||||||
Sbjct: 5 tgtgtctgcctgtctacacttgctgtgcagaccttctgct--cctgtacagcaggcacag 62
Query: 84 acaggcag 91
||||||||
Sbjct: 63 acaggcag 70
