miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00660;mir-214;AAWZ01045430.1/14604-14713 28377:Anolis
carolinensis (green anole)
Length = 110
Score = 196 bits (99), Expect = 4e-50
Identities = 105/107 (98%)
Strand = Plus / Plus
Query: 4 ctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgct 63
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4 ctggctggacagagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatcctct 63
Query: 64 cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
>RF00660;mir-214;AADN02033953.1/92-201 9031:Gallus gallus (chicken)
Length = 110
Score = 141 bits (71), Expect = 2e-33
Identities = 98/107 (91%)
Strand = Plus / Plus
Query: 4 ctggctggacggagttgtcatgtgtctgcctgtctacacttgctgtgcagaacatccgct 63
||||||| ||||||||||||||||||| ||||||||||||||||| || ||||||| ||
Sbjct: 4 ctggctgttcggagttgtcatgtgtctgtctgtctacacttgctgtccataacatccact 63
Query: 64 cacctgtacagcaggcacagacaggcagtcacatgacaacccagcct 110
|||||||||||| || |||||||||||||||| ||||||||||||||
Sbjct: 64 cacctgtacagcgggaacagacaggcagtcacctgacaacccagcct 110
>RF00660;mir-214;BAAF04061048.1/6848-6953 8090:Oryzias latipes
(Japanese medaka)
Length = 106
Score = 95.6 bits (48), Expect = 1e-19
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 24 tgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacag 83
||||||||||| |||||||||||||||||||| |||| | |||||||||||||||||||
Sbjct: 21 tgtgtctgcctatctacacttgctgtgcagaatatcctccaacctgtacagcaggcacag 80
Query: 84 acaggcag 91
||||||||
Sbjct: 81 acaggcag 88
>RF00660;mir-214;CT563248.9/82929-82824 7955:Danio rerio
(zebrafish)
Length = 106
Score = 91.7 bits (46), Expect = 2e-18
Identities = 62/66 (93%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 26 tgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacagac 85
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 23 tgtctgcctgtctacacttgctgtgcagaacttcc-tgcacctgtacagcaggcacagac 81
Query: 86 aggcag 91
||||||
Sbjct: 82 aggcag 87
>RF00660;mir-214;CAAB01001079.1/28431-28538 31033:Takifugu
rubripes
Length = 108
Score = 89.7 bits (45), Expect = 7e-18
Identities = 63/68 (92%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 24 tgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacag 83
||||||||||||||||||||||||||||||| | || ||| ||||||||||||||||||
Sbjct: 24 tgtgtctgcctgtctacacttgctgtgcagaccttctgct--cctgtacagcaggcacag 81
Query: 84 acaggcag 91
||||||||
Sbjct: 82 acaggcag 89
>RF00660;mir-214;BAAE01167369.1/1925-1818 8090:Oryzias latipes
(Japanese medaka)
Length = 108
Score = 89.7 bits (45), Expect = 7e-18
Identities = 63/68 (92%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 24 tgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacag 83
||||||||||||||||||||||||||||||| | || ||| ||||||||||||||||||
Sbjct: 24 tgtgtctgcctgtctacacttgctgtgcagaccttctgct--cctgtacagcaggcacag 81
Query: 84 acaggcag 91
||||||||
Sbjct: 82 acaggcag 89
>RF00660;mir-214;CAAB01000803.1/19699-19808 31033:Takifugu
rubripes
Length = 110
Score = 87.7 bits (44), Expect = 3e-17
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 24 tgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacag 83
||||||||||| ||| |||||||||||||||| |||| | |||||||||||||||||||
Sbjct: 24 tgtgtctgcctatctccacttgctgtgcagaatatcctccaacctgtacagcaggcacag 83
Query: 84 acaggcag 91
||||||||
Sbjct: 84 acaggcag 91
>RF00660;mir-214;AANH01005434.1/26064-26173 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 110
Score = 87.7 bits (44), Expect = 3e-17
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 24 tgtgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacag 83
||||||||||| |||||||||||||||||||| | || | |||||||||||||||||||
Sbjct: 24 tgtgtctgcctatctacacttgctgtgcagaataacctccaacctgtacagcaggcacag 83
Query: 84 acaggcag 91
||||||||
Sbjct: 84 acaggcag 91
