miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00695;MIR398;EU549661.1/156-270 3702:Arabidopsis thaliana (thale
cress)
Length = 115
Score = 228 bits (115), Expect = 1e-59
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 11 tggatctcgacagggttgatatgagaacacacgagcaatcaacggctataacgacgctac 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggatctcgacagggttgatatgagaacacacgagcaatcaacggctataacgacgctac 60
Query: 71 gtcattgttacagctctcgtttcatgtgttctcaggtcacccctgctgagctctt 125
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtcattgttacagctctcgtttcatgtgttctcaggtcacccctgctgagctctt 115
>RF00695;MIR398;EU549631.1/255-370 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 190 bits (96), Expect = 3e-48
Identities = 112/116 (96%), Gaps = 1/116 (0%)
Strand = Plus / Plus
Query: 11 tggatctcgacagggttgatatgagaacacacgagcaatcaacggctataacgacgctac 70
||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||
Sbjct: 1 tggatctcgacagggttgatatgagaacacacgagtaatcaacggctgtaatgacgctac 60
Query: 71 gtcattgttacagctctcg-tttcatgtgttctcaggtcacccctgctgagctctt 125
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtcattgttacagctctcgttttcatgtgttctcaggtcacccctgctgagctctt 116
>RF00695;MIR398;AC189227.2/79561-79445 51351:Brassica rapa subsp.
pekinensis
Length = 117
Score = 109 bits (55), Expect = 1e-23
Identities = 100/114 (87%), Gaps = 2/114 (1%)
Strand = Plus / Plus
Query: 12 ggatctcgacagggttgatatgagaacacacgagcaatcaacggctataacgacgctacg 71
||||||||||||||| |||||||||||||| | ||||||||||||| ||| ||||| ||
Sbjct: 2 ggatctcgacagggtcgatatgagaacacatgtgcaatcaacggctgtaatgacgccaca 61
Query: 72 tcattgt--tacagctctcgtttcatgtgttctcaggtcacccctgctgagctc 123
||||| | ||| || || ||||||||||||||||||||||||||||||||||
Sbjct: 62 tcattataacacatctgtcttttcatgtgttctcaggtcacccctgctgagctc 115
>RF00695;MIR398;AC146941.8/124295-124199 3880:Medicago truncatula
(barrel medic)
Length = 97
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 92 tcatgtgttctcaggtcacccctgctga 119
||||||||||||||||| ||||||||||
Sbjct: 64 tcatgtgttctcaggtcgcccctgctga 91
>RF00695;MIR398;AASG02014986.1/899-1036 3988:Ricinus communis
(castor bean)
Length = 138
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 90 tttcatgtgttctcaggtcacccctgc 116
||||||||||||||||||| |||||||
Sbjct: 103 tttcatgtgttctcaggtcgcccctgc 129
>RF00695;MIR398;AM426431.2/9842-9931 29760:Vitis vinifera
Length = 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 92 tcatgtgttctcaggtcacccctgctg 118
||||||||||||||||| |||||||||
Sbjct: 57 tcatgtgttctcaggtcgcccctgctg 83
>RF00695;MIR398;AARH01000462.1/173558-173473 3694:Populus
trichocarpa
Length = 86
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 91 ttcatgtgttctcaggtcacccctgc 116
|||||||||||||||||| |||||||
Sbjct: 52 ttcatgtgttctcaggtcgcccctgc 77
