miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00659;mir-365;AADN02023913.1/98870-98778 9031:Gallus gallus
(chicken)
Length = 93
Score = 151 bits (76), Expect = 2e-36
Identities = 79/80 (98%)
Strand = Plus / Plus
Query: 1 cgcagggaaaatgagggacttttgggggcagatgtgtttccattccactatcataatgcc 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 3 cgcagggaaaatgagggacttttgggggcagatgtgtttccattacactatcataatgcc 62
Query: 61 cctaaaaatccttattgctc 80
||||||||||||||||||||
Sbjct: 63 cctaaaaatccttattgctc 82
>RF00659;mir-365;CU138533.13/80864-80956 7955:Danio rerio
(zebrafish)
Length = 93
Score = 95.6 bits (48), Expect = 8e-20
Identities = 72/80 (90%)
Strand = Plus / Plus
Query: 1 cgcagggaaaatgagggacttttgggggcagatgtgtttccattccactatcataatgcc 60
|||||||| |||||||| |||||||||||| |||||||| || ||| |||||||||||
Sbjct: 3 cgcagggagaatgaggggcttttgggggcacttgtgtttcagtttcaccatcataatgcc 62
Query: 61 cctaaaaatccttattgctc 80
||||||||||||||||||||
Sbjct: 63 cctaaaaatccttattgctc 82
>RF00659;mir-365;BAAE01286148.1/272-364 8090:Oryzias latipes
(Japanese medaka)
Length = 93
Score = 65.9 bits (33), Expect = 7e-11
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 8 aaaatgagggacttttgggggcagatgtgtttccattccactatcataatgcccctaaaa 67
|||||||||||||||| ||||||| ||||||| | | | |||||||||||||||||
Sbjct: 10 aaaatgagggacttttaggggcagctgtgttttattaacccagtcataatgcccctaaaa 69
Query: 68 atccttattgctc 80
|||||||||||||
Sbjct: 70 atccttattgctc 82
>RF00659;mir-365;AAPE01619298.1/1229-1137 59463:Myotis lucifugus
(little brown bat)
Length = 93
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 51 tcataatgcccctaaaaatccttattgctc 80
||||||||||||||||||||||||||||||
Sbjct: 53 tcataatgcccctaaaaatccttattgctc 82
>RF00659;mir-365;AAIY01424277.1/585-676 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 92
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 51 tcataatgcccctaaaaatccttattg 77
|||||||||||||||||||||||||||
Sbjct: 52 tcataatgcccctaaaaatccttattg 78
>RF00659;mir-365;AAVX01240641.1/1189-1241 7868:Callorhinchus milii
(ghost shark)
Length = 53
Score = 46.1 bits (23), Expect = 7e-05
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 17 gacttttgggggcagatgtgtttccattccactatcataatgcccctaaaa 67
||||||||||||||| |||||||| | || ||||||||||||||||||
Sbjct: 1 gacttttgggggcaggtgtgtttcagctgcataatcataatgcccctaaaa 51
>RF00659;mir-365;AAVX01470594.1/166-258 7868:Callorhinchus milii
(ghost shark)
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 51 tcataatgcccctaaaaatccttatt 76
||||||||||||||||||||| ||||
Sbjct: 53 tcataatgcccctaaaaatccctatt 78
