miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00340;SNORA36;ABDC01299701.1/1392-1522 30608:Microcebus murinus
(gray mouse lemur)
Length = 131
Score = 77.8 bits (39), Expect = 2e-14
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 gaacattgaaacaggctaggagaagtgattggatagaaaatggtattctattcatttatc 60
|||||||||||| ||||| | ||| |||||||||||||||| || ||||||||||||||
Sbjct: 58 gaacattgaaactggctacgggaaatgattggatagaaaatattactctattcatttatc 117
Query: 61 tcccagcctacaaaa 75
||||||||||||||
Sbjct: 118 -cccagcctacaaaa 131
>RF00340;SNORA36;ABVD01199245.1/1451-1320 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 132
Score = 73.8 bits (37), Expect = 3e-13
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 7 tgaaacaggctaggagaagtgattggatagaaaatggtattctattcatttatctcccag 66
|||||||||||||| ||| |||||||||||||||| |||||| | ||||| |||| |||
Sbjct: 64 tgaaacaggctaggggaaatgattggatagaaaatattattctgtccatttgtctctcag 123
Query: 67 cctacaaaa 75
|||||||||
Sbjct: 124 cctacaaaa 132
>RF00340;SNORA36;AAKN02019180.1/128364-128494 10141:Cavia porcellus
(domestic guinea pig)
Length = 131
Score = 65.9 bits (33), Expect = 7e-11
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 26 tgattggatagaaaatggtattctattcatttatctc 62
||||||||||||||||| |||||||||||||||||||
Sbjct: 83 tgattggatagaaaatgttattctattcatttatctc 119
>RF00340;SNORA36;AAGW01325785.1/1194-1323 9986:Oryctolagus cuniculus
(rabbit)
Length = 130
Score = 65.9 bits (33), Expect = 7e-11
Identities = 64/73 (87%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 gaacattgaaacaggctaggagaagtgattggatagaaaatggtattctattcatttatc 60
|||||||||||| ||||||| || | || |||||||||||| |||||||||||| ||||
Sbjct: 57 gaacattgaaactggctagggaaaatcatcggatagaaaatgttattctattcatatatc 116
Query: 61 tcccagcctacaa 73
||||||||||||
Sbjct: 117 -cccagcctacaa 128
>RF00340;SNORA36;AAPE01421970.1/734-602 59463:Myotis lucifugus
(little brown bat)
Length = 133
Score = 60.0 bits (30), Expect = 4e-09
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 gaacattgaaacaggctaggagaagtgattggatagaaaatggt-attctattcatttat 59
||||||||||||||||||||| || ||| ||| ||||||| | | |||||||| ||||
Sbjct: 58 gaacattgaaacaggctaggataaatgaatgggtagaaaaatctgactctattcacttat 117
Query: 60 ctcccagcctacaa 73
||||||||||||||
Sbjct: 118 ctcccagcctacaa 131
>RF00340;SNORA36;AC188648.11/111060-110940 9615:Canis lupus
familiaris (dog)
Length = 121
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 47 tctattcatttatctcccagcctacaaaa 75
|||||||||||||||||||||||||||||
Sbjct: 93 tctattcatttatctcccagcctacaaaa 121
>RF00340;SNORA36;AAGV020439524.1/2007-2144 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 138
Score = 56.0 bits (28), Expect = 7e-08
Identities = 62/72 (86%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 5 attgaaacaggctaggagaagtgattggatagaaaa-tggtattctattcatttatctcc 63
||||||||||| ||||| ||||| |||||||||||| | | ||||||||| |||| |||
Sbjct: 67 attgaaacaggataggataagtggttggatagaaaagtactgttctattcacttatgtcc 126
Query: 64 cagcctacaaaa 75
||| ||||||||
Sbjct: 127 cagtctacaaaa 138
>RF00340;SNORA36;AAKN02004756.1/29029-28904 10141:Cavia porcellus
(domestic guinea pig)
Length = 126
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 29 ttggatagaaaatggtattctattcatttatc 60
|||||||||||||| |||||||||||||||||
Sbjct: 82 ttggatagaaaatgttattctattcatttatc 113
>RF00340;SNORA36;CABD01065828.1/6971-6850 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 122
Score = 52.0 bits (26), Expect = 1e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 26 tgattggatagaaaatggtattctattcatttatctcccagcctacaaaa 75
||||||| |||||| | |||||||||||||| ||||||||||||||||
Sbjct: 73 tgattgggtagaaagtattattctattcatttgcctcccagcctacaaaa 122
>RF00340;SNORA36;ACBE01024912.1/965-1092 9685:Felis catus (domestic
cat)
Length = 128
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 47 tctattcatttatctcccagcctacaaaa 75
|||||||||| ||||||||||||||||||
Sbjct: 100 tctattcattgatctcccagcctacaaaa 128
>RF00340;SNORA36;ABRP01297130.1/1518-1622 132908:Pteropus vampyrus
(large flying fox)
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 55/64 (85%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 1 gaacattgaaacaggctaggagaag-tgattggatagaaaatggtattctattcatttat 59
|||||||||||||||||| || || | ||||||||| |||| || |||||||||||||
Sbjct: 28 gaacattgaaacaggctaagaaaaaataattggataggaaatattactctattcatttat 87
Query: 60 ctcc 63
||||
Sbjct: 88 ctcc 91
>RF00340;SNORA36;AAHX01095142.1/71787-71884 10116:Rattus
norvegicus (Norway rat)
Length = 98
Score = 48.1 bits (24), Expect = 2e-05
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 27 gattggatagaaaatggtattctattcatttatctcccagcctacaaa 74
|||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 50 gattggatagaaaacattattctattcatttactccccagcctacaaa 97
>RF00340;SNORA36;AAYZ01558510.1/1099-965 9978:Ochotona princeps
(American pika)
Length = 135
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 45 attctattcatttatctcccagcctaca 72
|||||||||| |||||||||||||||||
Sbjct: 105 attctattcacttatctcccagcctaca 132
>RF00340;SNORA36;AAPE01238968.1/1641-1768 59463:Myotis lucifugus
(little brown bat)
Length = 128
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 49 tattcatttatctcccagcctacaaaa 75
|||||||||||||||||||||| ||||
Sbjct: 102 tattcatttatctcccagcctataaaa 128
>RF00340;SNORA36;AAPE01522613.1/608-478 59463:Myotis lucifugus
(little brown bat)
Length = 131
Score = 46.1 bits (23), Expect = 7e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 33 atagaaaatggtattctattcatttatctcccagcctacaaaa 75
||||||||| || |||||||||||| ||||||||||| ||||
Sbjct: 89 atagaaaattttactctattcatttacctcccagcctaaaaaa 131
>RF00340;SNORA36;ABRO01217667.1/6562-6691 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 130
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 43 gtattctattcatttatctcccagcctacaa 73
|||||||||||||||| |||||||||||||
Sbjct: 98 gtattctattcatttacttcccagcctacaa 128
