miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00966;mir-676;ABRR01332325.1/3868-3956 30538:Lama pacos
(alpaca)
Length = 89
Score = 121 bits (61), Expect = 1e-27
Identities = 73/77 (94%)
Strand = Plus / Plus
Query: 4 gcgtgactcttcaatctcaggactcgcataattagcagaatgccgtcctaaggttgttga 63
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 13 gcgtgactcttcaatctcaggactcgcatcattaatggaatgccgtcctaaggttgttga 72
Query: 64 gttctgcgtttctgggc 80
|||||||||||||||||
Sbjct: 73 gttctgcgtttctgggc 89
>RF00966;mir-676;AAGU02345917.1/1419-1507 9785:Loxodonta africana
(African savanna elephant)
Length = 89
Score = 87.7 bits (44), Expect = 2e-17
Identities = 59/64 (92%)
Strand = Plus / Plus
Query: 7 tgactcttcaatctcaggactcgcataattagcagaatgccgtcctaaggttgttgagtt 66
||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||
Sbjct: 16 tgactcttcaatctcaggacttgcagaattaatggaatgccgtcctaaggttgttgagtt 75
Query: 67 ctgc 70
||||
Sbjct: 76 ctgc 79
>RF00966;mir-676;AAYZ01448796.1/362-450 9978:Ochotona princeps
(American pika)
Length = 89
Score = 85.7 bits (43), Expect = 8e-17
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 4 gcgtgactcttcaatctcaggactcgcataattagcagaatgccgtcctaaggttgttga 63
|||||||||| ||| ||||||||| ||| |||| ||||||||||||||||||||||||
Sbjct: 13 gcgtgactctgcaacctcaggacttgcaggattaagagaatgccgtcctaaggttgttga 72
Query: 64 gttctgcgtttctgg 78
||| |||||||||||
Sbjct: 73 gttgtgcgtttctgg 87
>RF00966;mir-676;ABRQ01840532.1/340-428 9813:Procavia capensis
(cape rock hyrax)
Length = 89
Score = 85.7 bits (43), Expect = 8e-17
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 8 gactcttcaatctcaggactcgcataattagcagaatgccgtcctaaggttgttgagttc 67
|||||||||| ||||||||| ||| |||| | ||||||||||||||||||||||||||||
Sbjct: 17 gactcttcaacctcaggacttgcagaattggtagaatgccgtcctaaggttgttgagttc 76
Query: 68 tgcgttt 74
|| ||||
Sbjct: 77 tgtgttt 83
>RF00966;mir-676;ABGA01047935.1/1386-1474 9601:Pongo abelii
(Sumatran orangutan)
Length = 89
Score = 79.8 bits (40), Expect = 5e-15
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 1 aacgcgtgactcttcaatctcaggactcgcataattagcagaatgccgtcctaaggttgt 60
||||| ||||||||||| ||||||||| ||| |||| ||||||||||||||||||||
Sbjct: 10 aacgcatgactcttcaacctcaggacttgcagaattgatggaatgccgtcctaaggttgt 69
Query: 61 tgagttctgcgtttctgggc 80
|||||| ||| |||||||||
Sbjct: 70 tgagttgtgcatttctgggc 89
>RF00966;mir-676;AJ278907.1/19456-19535 9913:Bos taurus (cattle)
Length = 80
Score = 71.9 bits (36), Expect = 1e-12
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 18 tctcaggactcgcataattagcagaatgccgtcctaaggttgttgagttctgcgtttctg 77
|||||||||| ||| ||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 18 tctcaggacttgcacaattaatggaatgccgtcctaaggttgttgagttctgcatttctg 77
>RF00966;mir-676;AAGW01578110.1/911-823 9986:Oryctolagus cuniculus
(rabbit)
Length = 89
Score = 69.9 bits (35), Expect = 5e-12
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 6 gtgactcttcaatctcaggactcgcataattagcagaatgccgtcctaaggttgttgagt 65
|||||||||||| ||||||||| ||| || || ||| ||||||||||||||||||||||
Sbjct: 15 gtgactcttcaacctcaggacttgcagaactaagagagtgccgtcctaaggttgttgagt 74
Query: 66 tctgcgtttctgggc 80
| ||| |||| ||||
Sbjct: 75 tgtgcatttcagggc 89
>RF00966;mir-676;CAAA01190724.1/4878-4790 10090:Mus musculus
(house mouse)
Length = 89
Score = 60.0 bits (30), Expect = 4e-09
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 7 tgactcttcaatctcaggactcgcataattagcagaatgccgtcctaaggttgttgagtt 66
||||||| ||| || |||||| ||| ||||| |||||||||||| ||||||||||| |
Sbjct: 16 tgactctacaaccttaggacttgcagaattaaaggaatgccgtcctgaggttgttgagct 75
Query: 67 ctgcgtttctgggc 80
|||||||||||||
Sbjct: 76 gtgcgtttctgggc 89
>RF00966;mir-676;ABRP01227195.1/6870-6955 132908:Pteropus vampyrus
(large flying fox)
Length = 86
Score = 50.1 bits (25), Expect = 4e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 11 tcttcaatctcaggactcgcataattagcagaatgccgtcctaag 55
||||||||||||||| ||||| |||||| |||||| ||||||||
Sbjct: 20 tcttcaatctcaggagtcgcagaattagtggaatgctgtcctaag 64
>RF00966;mir-676;ABRT010164449.1/3693-3781 9478:Tarsius syrichta
(Philippine tarsier)
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 19 ctcaggactcgcataattagcagaatgccgtcctaaggttgttgagttctgcgtttctgg 78
||||||||| ||| ||||| |||||| |||||||||||||||| | ||| |||||||
Sbjct: 28 ctcaggacttgcagaattaaaggaatgctgtcctaaggttgttgaagtgtgcatttctgg 87
Query: 79 gc 80
||
Sbjct: 88 gc 89
>RF00966;mir-676;ABRO01058610.1/2135-2220 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 47 cgtcctaaggttgttgagttctgcgtttctgggc 80
||||||||| |||||||||| |||||||||||||
Sbjct: 54 cgtcctaag-ttgttgagttgtgcgtttctgggc 86
