miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00917;mir-708;ABRQ01033298.1/1355-1442 9813:Procavia capensis
(cape rock hyrax)
Length = 88
Score = 143 bits (72), Expect = 4e-34
Identities = 78/80 (97%)
Strand = Plus / Plus
Query: 1 ccctcaaggagcttacaatctagctgggggtgaatgacttgcacatgaacgcaactagac 60
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 6 ccctcaaggagcttacaatctagctgggggtaaaagacttgcacatgaacgcaactagac 65
Query: 61 tgtgagcttctagagggcag 80
||||||||||||||||||||
Sbjct: 66 tgtgagcttctagagggcag 85
>RF00655;mir-28;AAEX02028916.1/2970-3062 9615:Canis lupus
familiaris (dog)
Length = 93
Score = 143 bits (72), Expect = 4e-34
Identities = 78/80 (97%)
Strand = Plus / Minus
Query: 1 ccctcaaggagcttacaatctagctgggggtgaatgacttgcacatgaacgcaactagac 60
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 85 ccctcaaggagcttacaatctagctgggggtgaacggcttgcacatgaacgcaactagac 26
Query: 61 tgtgagcttctagagggcag 80
||||||||||||||||||||
Sbjct: 25 tgtgagcttctagagggcag 6
>RF00655;mir-28;ABRQ01033298.1/1444-1352 9813:Procavia capensis
(cape rock hyrax)
Length = 93
Score = 143 bits (72), Expect = 4e-34
Identities = 78/80 (97%)
Strand = Plus / Minus
Query: 1 ccctcaaggagcttacaatctagctgggggtgaatgacttgcacatgaacgcaactagac 60
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 85 ccctcaaggagcttacaatctagctgggggtaaaagacttgcacatgaacgcaactagac 26
Query: 61 tgtgagcttctagagggcag 80
||||||||||||||||||||
Sbjct: 25 tgtgagcttctagagggcag 6
>RF00917;mir-708;AAYZ01001621.1/4751-4664 9978:Ochotona princeps
(American pika)
Length = 88
Score = 127 bits (64), Expect = 2e-29
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 1 ccctcaaggagcttacaatctagctgggggtgaatgacttgcacatgaacgcaactagac 60
||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||
Sbjct: 6 ccctcaaggagcttacaatctagctggggctgaatgacttgcacgagaacacaactagac 65
Query: 61 tgtgagcttctagagggcag 80
||||||||||||||||||||
Sbjct: 66 tgtgagcttctagagggcag 85
>RF00655;mir-28;AAYZ01598458.1/215-123 9978:Ochotona princeps
(American pika)
Length = 93
Score = 127 bits (64), Expect = 2e-29
Identities = 76/80 (95%)
Strand = Plus / Minus
Query: 1 ccctcaaggagcttacaatctagctgggggtgaatgacttgcacatgaacgcaactagac 60
||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||
Sbjct: 85 ccctcaaggagcttacaatctagctggggctgaatgacttgcacgagaacacaactagac 26
Query: 61 tgtgagcttctagagggcag 80
||||||||||||||||||||
Sbjct: 25 tgtgagcttctagagggcag 6
>RF00917;mir-708;ABRP01067784.1/10295-10387 132908:Pteropus
vampyrus (large flying fox)
Length = 93
Score = 105 bits (53), Expect = 8e-23
Identities = 77/85 (90%), Gaps = 5/85 (5%)
Strand = Plus / Plus
Query: 1 ccctcaaggagcttacaatctagctgggggtgaatga-----cttgcacatgaacgcaac 55
||||||||||||||||||||||||||||||| || | ||||||||||||||||||
Sbjct: 6 ccctcaaggagcttacaatctagctgggggtaaactaaacaacttgcacatgaacgcaac 65
Query: 56 tagactgtgagcttctagagggcag 80
|||||||||||||||||||||||||
Sbjct: 66 tagactgtgagcttctagagggcag 90
>RF00655;mir-28;AAGV020456123.1/438-346 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 93
Score = 103 bits (52), Expect = 3e-22
Identities = 73/80 (91%)
Strand = Plus / Minus
Query: 1 ccctcaaggagcttacaatctagctgggggtgaatgacttgcacatgaacgcaactagac 60
||||||||||||||||||||||||||||||||| ||| |||||| || | |||||||||
Sbjct: 85 ccctcaaggagcttacaatctagctgggggtgagagacctgcacaggatctcaactagac 26
Query: 61 tgtgagcttctagagggcag 80
|| |||||||||||||||||
Sbjct: 25 tgggagcttctagagggcag 6
>RF00917;mir-708;AAPN01127904.1/321-240 9258:Ornithorhynchus
anatinus (platypus)
Length = 82
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 2 cctcaaggagcttacaatctagc 24
|||||||||||||||||||||||
Sbjct: 7 cctcaaggagcttacaatctagc 29
>RF00655;mir-28;AAPN01127904.1/238-324 9258:Ornithorhynchus
anatinus (platypus)
Length = 87
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 2 cctcaaggagcttacaatctagc 24
|||||||||||||||||||||||
Sbjct: 78 cctcaaggagcttacaatctagc 56
