miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00641;mir-154;ABRQ01054366.1/427-503 9813:Procavia capensis
(cape rock hyrax)
Length = 77
Score = 113 bits (57), Expect = 3e-25
Identities = 73/77 (94%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 1 ggtacatgaggtggttgaccagagagcacacgcttta-ttgtgccgtttgtgacctggtc 59
|||||||||| |||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct: 1 ggtacatgagatggttgaccagagagcacacgctttatttatgacgtttgtgacctggtc 60
Query: 60 cactaaccctcagtatc 76
|||||||||||||||||
Sbjct: 61 cactaaccctcagtatc 77
>RF00641;mir-154;AAGU02503119.1/1083-1160 9785:Loxodonta africana
(African savanna elephant)
Length = 78
Score = 101 bits (51), Expect = 1e-21
Identities = 67/71 (94%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 7 tgaggtggttgaccagagagcacacgctttattg-tgccgtttgtgacctggtccactaa 65
|||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 8 tgagatggttgaccagagagcacacgctttatttatgacgtttgtgacctggtccactaa 67
Query: 66 ccctcagtatc 76
|||||||||||
Sbjct: 68 ccctcagtatc 78
>RF00641;mir-154;AAYZ01216262.1/1115-1191 9978:Ochotona princeps
(American pika)
Length = 77
Score = 95.6 bits (48), Expect = 7e-20
Identities = 64/68 (94%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 7 tgaggtggttgaccagagagcacacgcttta-ttgtgccgtttgtgacctggtccactaa 65
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct: 7 tgaggtggttgaccagagagcacacgctgtatttgtgccgtttgtgacctggtccactga 66
Query: 66 ccctcagt 73
|||||||
Sbjct: 67 acctcagt 74
>RF00641;mir-154;ABRQ01054364.1/4611-4690 9813:Procavia capensis
(cape rock hyrax)
Length = 80
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 56 ggtccactaaccctcagtatc 76
|||||||||||||||||||||
Sbjct: 60 ggtccactaaccctcagtatc 80
