miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01015;mir-885;AAGU02189671.1/3897-3824 9785:Loxodonta africana
(African savanna elephant)
Length = 74
Score = 135 bits (68), Expect = 9e-32
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 9 ccgcgctctctccattacactaccctgcctcttctccacgagaggcagcggggtgtagtg 68
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccgcactctctccattacactaccctgcctcttctccacgagaggcagcggggtgtagtg 60
Query: 69 gatagagcacgg 80
||||||||||||
Sbjct: 61 gatagagcacgg 72
>RF01015;mir-885;ABRP01134916.1/8454-8527 132908:Pteropus vampyrus
(large flying fox)
Length = 74
Score = 89.7 bits (45), Expect = 5e-18
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 13 gctctctccattacactaccctgcctcttctccacgagaggcagcggggtgtagtggata 72
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
Sbjct: 5 gctctctccattacactaccctgcctcttctctgtgagaggcagtggggtgtagtggaga 64
Query: 73 gagca 77
|||||
Sbjct: 65 gagca 69
>RF01015;mir-885;AAQR01546943.1/4149-4219 30611:Otolemur garnettii
(small-eared galago)
Length = 71
Score = 58.0 bits (29), Expect = 2e-08
Identities = 53/57 (92%), Gaps = 3/57 (5%)
Strand = Plus / Plus
Query: 21 cattacactaccctgcctcttctccacgagaggca-gcggggtgtagtggatagagc 76
|||||||||||| ||||||||||| | |||||||| |||||||||||||||||||||
Sbjct: 11 cattacactacc-tgcctcttctc-atgagaggcaagcggggtgtagtggatagagc 65
>RF01015;mir-885;AAKN02049207.1/166389-166462 10141:Cavia
porcellus (domestic guinea pig)
Length = 74
Score = 58.0 bits (29), Expect = 2e-08
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 14 ctctctccattacactaccctgcctcttctccacgagaggcagcggggtgtagtggatag 73
||||||||| |||| | || ||||||||||||| || ||||||| |||| ||||||| ||
Sbjct: 6 ctctctccactacaatgccttgcctcttctccaggaaaggcagcagggtatagtggacag 65
Query: 74 agcac 78
|||||
Sbjct: 66 agcac 70
