miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01014;mir-1306;AAIY01554338.1/803-730 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 74
Score = 137 bits (69), Expect = 2e-32
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 1 gtctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gtctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctgg 62
Query: 61 tggtgatgg 69
|||||||||
Sbjct: 63 tggtgatgg 71
>RF01014;mir-1306;BAAE01177956.1/1380-1307 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 119 bits (60), Expect = 5e-27
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 3 ctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctggtg 62
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct: 5 ctccaccacctcccctgcaaacgtccagtgacgcagaggtaatggacgttagctctggtg 64
Query: 63 gtgatgga 70
||||||||
Sbjct: 65 gtgatgga 72
>RF01014;mir-1306;ABQO010269158.1/2006-1933 9315:Macropus eugenii
(tammar wallaby)
Length = 74
Score = 99.6 bits (50), Expect = 5e-21
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 3 ctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctggtg 62
|||||||| |||||||||||| ||||||||||||||| |||||||| |||||||||||||
Sbjct: 5 ctccaccagctcccctgcaaaagtccagtgatgcagacgtaatggatgttggctctggtg 64
Query: 63 gtgatggaca 72
||| ||||||
Sbjct: 65 gtgttggaca 74
>RF01014;mir-1306;AAVX01501338.1/278-205 7868:Callorhinchus milii
(ghost shark)
Length = 74
Score = 97.6 bits (49), Expect = 2e-20
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 3 ctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctggtg 62
||||||||||||||||||||||||||||||| || ||||| ||||||||||||| ||||
Sbjct: 5 ctccaccacctcccctgcaaacgtccagtgaggccgaggttatggacgttggctgcggtg 64
Query: 63 gtgatggac 71
|||||||||
Sbjct: 65 gtgatggac 73
>RF01014;mir-1306;ABVD01368311.1/815-888 9358:Choloepus hoffmanni
(Hoffmann's two-fingered sloth)
Length = 74
Score = 83.8 bits (42), Expect = 3e-16
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 3 ctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctggtg 62
|||| |||||||||||||||| ||| ||||||||||| ||||| || ||||| |||||||
Sbjct: 5 ctcctccacctcccctgcaaatgtctagtgatgcagaagtaatagatgttggatctggtg 64
Query: 63 gtgatggaca 72
||||||||||
Sbjct: 65 gtgatggaca 74
>RF01014;mir-1306;AAGW01545204.1/4216-4143 9986:Oryctolagus
cuniculus (rabbit)
Length = 74
Score = 83.8 bits (42), Expect = 3e-16
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 1 gtctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctgg 60
||||||||||||||| |||||| |||||||||||||| |||||||||| ||||||||||
Sbjct: 3 gtctccaccacctccgttgcaaatgtccagtgatgcagtggtaatggacattggctctgg 62
Query: 61 tggtga 66
| ||||
Sbjct: 63 tagtga 68
>RF01014;mir-1306;ABVD01062991.1/6561-6634 9358:Choloepus
hoffmanni (Hoffmann's two-fingered sloth)
Length = 74
Score = 54.0 bits (27), Expect = 3e-07
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 2 tctccaccacctcccctgcaaacgtccagtgatgcagaggtaatggacgttggctctggt 61
|||||| ||||| ||||||||||| | |||||||||||||| | ||| |||| ||||
Sbjct: 4 tctccagcaccttgcctgcaaacgttccctgatgcagaggtaacaggcgtcggctgtggt 63
Query: 62 ggtgatggaca 72
|||||||||||
Sbjct: 64 ggtgatggaca 74
