miRNEST 2.0, an integrative microRNA resource :: BLAST
>26449_tgu-mir-122:mirbase
Length = 72
Score = 79.8 bits (40), Expect = 2e-16
Identities = 64/70 (91%), Gaps = 4/70 (5%)
Strand = Plus / Plus
Query: 2 ccagagctgtggagtgtgacaatggtgtttgtat-catctgtcgtcaaacgccattatca 60
|||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct: 2 ccagagctgtggagtgtgacaatggtgtttgtgtccatct---atcaaacgccattatca 58
Query: 61 cactaaatag 70
||||||||||
Sbjct: 59 cactaaatag 68
>31478_oan-mir-122:mirbase
Length = 111
Score = 79.8 bits (40), Expect = 2e-16
Identities = 65/71 (91%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 2 ccagagctgtggagtgtgacaatggtgtttgtatcatctgtc-gtcaaacgccattatca 60
|||||||||||||||||||||||||||||||| || | ||| ||||||||||||||||
Sbjct: 20 ccagagctgtggagtgtgacaatggtgtttgtgtc--cagtctatcaaacgccattatca 77
Query: 61 cactaaatagc 71
|||||||||||
Sbjct: 78 cactaaatagc 88
>25937_gga-mir-122-1:mirbase
Length = 77
Score = 75.8 bits (38), Expect = 4e-15
Identities = 64/71 (90%), Gaps = 5/71 (7%)
Strand = Plus / Plus
Query: 3 cagagctgtggagtgtgacaatggtgtttgtatc--atctgtcgtcaaacgccattatca 60
||||||||||||||||||||||||||||||| || |||| ||||||||||||||||
Sbjct: 1 cagagctgtggagtgtgacaatggtgtttgtgtccaatct---atcaaacgccattatca 57
Query: 61 cactaaatagc 71
|||||||||||
Sbjct: 58 cactaaatagc 68
>34731_tni-mir-122:mirbase
Length = 66
Score = 75.8 bits (38), Expect = 4e-15
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 6 agctgtggagtgtgacaatggtgtttgtatcatctgtcgtcaaacgccattatcacacta 65
|||||||||||||||||||||||||||| || | | | |||||||||||||||||||||
Sbjct: 1 agctgtggagtgtgacaatggtgtttgtgtcctttct-ttcaaacgccattatcacacta 59
Query: 66 aatagc 71
||||||
Sbjct: 60 aatagc 65
>30207_ptr-mir-122:mirbase
Length = 84
Score = 73.8 bits (37), Expect = 2e-14
Identities = 62/69 (89%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 3 cagagctgtggagtgtgacaatggtgtttgtatcatctgtcgtcaaacgccattatcaca 62
||||||||||||||||||||||||||||||| || | | ||||||||||||||||||
Sbjct: 6 cagagctgtggagtgtgacaatggtgtttgtgtc-taaattatcaaacgccattatcaca 64
Query: 63 ctaaatagc 71
|||||||||
Sbjct: 65 ctaaatagc 73
>27371_mdo-mir-122:mirbase
Length = 74
Score = 69.9 bits (35), Expect = 2e-13
Identities = 63/70 (90%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 3 cagagctgtggagtgtgacaatggtgtttgtatcatctgtc-gtcaaacgccattatcac 61
||||||| ||||||||||||||||||||||| || | ||| |||||||||||||||||
Sbjct: 1 cagagctatggagtgtgacaatggtgtttgtgtc--cagtctatcaaacgccattatcac 58
Query: 62 actaaatagc 71
||||||||||
Sbjct: 59 actaaatagc 68
>25938_gga-mir-122-2:mirbase
Length = 77
Score = 67.9 bits (34), Expect = 9e-13
Identities = 63/71 (88%), Gaps = 5/71 (7%)
Strand = Plus / Plus
Query: 3 cagagctgtggagtgtgacaatggtgtttgtatc--atctgtcgtcaaacgccattatca 60
||||||| ||||||||||||||||||||||| || |||| ||||||||||||||||
Sbjct: 1 cagagctatggagtgtgacaatggtgtttgtgtccaatct---atcaaacgccattatca 57
Query: 61 cactaaatagc 71
|||||||||||
Sbjct: 58 cactaaatagc 68
>27714_mml-mir-122a:mirbase
Length = 85
Score = 67.9 bits (34), Expect = 9e-13
Identities = 63/71 (88%), Gaps = 5/71 (7%)
Strand = Plus / Plus
Query: 3 cagagctgtggagtgtgacaatggtgtttgtatc--atctgtcgtcaaacgccattatca 60
||||||||||||||||||||||||||||||| || | || ||||||||||||||||
Sbjct: 7 cagagctgtggagtgtgacaatggtgtttgtgtctaaact---atcaaacgccattatca 63
Query: 61 cactaaatagc 71
|||||||||||
Sbjct: 64 cactaaatagc 74
>28426_hsa-mir-122:mirbase
Length = 85
Score = 67.9 bits (34), Expect = 9e-13
Identities = 63/71 (88%), Gaps = 5/71 (7%)
Strand = Plus / Plus
Query: 3 cagagctgtggagtgtgacaatggtgtttgtatc--atctgtcgtcaaacgccattatca 60
||||||||||||||||||||||||||||||| || | || ||||||||||||||||
Sbjct: 7 cagagctgtggagtgtgacaatggtgtttgtgtctaaact---atcaaacgccattatca 63
Query: 61 cactaaatagc 71
|||||||||||
Sbjct: 64 cactaaatagc 74
>29379_hsa-mir-3591:mirbase
Length = 73
Score = 67.9 bits (34), Expect = 9e-13
Identities = 63/71 (88%), Gaps = 5/71 (7%)
Strand = Plus / Minus
Query: 3 cagagctgtggagtgtgacaatggtgtttgtatc--atctgtcgtcaaacgccattatca 60
||||||||||||||||||||||||||||||| || | || ||||||||||||||||
Sbjct: 73 cagagctgtggagtgtgacaatggtgtttgtgtctaaact---atcaaacgccattatca 17
Query: 61 cactaaatagc 71
|||||||||||
Sbjct: 16 cactaaatagc 6
>29380_hsa-mir-3591:mirbase
Length = 73
Score = 67.9 bits (34), Expect = 9e-13
Identities = 63/71 (88%), Gaps = 5/71 (7%)
Strand = Plus / Minus
Query: 3 cagagctgtggagtgtgacaatggtgtttgtatc--atctgtcgtcaaacgccattatca 60
||||||||||||||||||||||||||||||| || | || ||||||||||||||||
Sbjct: 73 cagagctgtggagtgtgacaatggtgtttgtgtctaaact---atcaaacgccattatca 17
Query: 61 cactaaatagc 71
|||||||||||
Sbjct: 16 cactaaatagc 6
>30814_ppy-mir-122:mirbase
Length = 85
Score = 67.9 bits (34), Expect = 9e-13
Identities = 63/71 (88%), Gaps = 5/71 (7%)
Strand = Plus / Plus
Query: 3 cagagctgtggagtgtgacaatggtgtttgtatc--atctgtcgtcaaacgccattatca 60
||||||||||||||||||||||||||||||| || | || ||||||||||||||||
Sbjct: 7 cagagctgtggagtgtgacaatggtgtttgtgtctaaact---atcaaacgccattatca 63
Query: 61 cactaaatagc 71
|||||||||||
Sbjct: 64 cactaaatagc 74
>33197_bta-mir-122:mirbase
Length = 85
Score = 67.9 bits (34), Expect = 9e-13
Identities = 63/71 (88%), Gaps = 5/71 (7%)
Strand = Plus / Plus
Query: 3 cagagctgtggagtgtgacaatggtgtttgtatc--atctgtcgtcaaacgccattatca 60
||||||||||||||||||||||||||||||| || | || ||||||||||||||||
Sbjct: 7 cagagctgtggagtgtgacaatggtgtttgtgtccaaact---atcaaacgccattatca 63
Query: 61 cactaaatagc 71
|||||||||||
Sbjct: 64 cactaaatagc 74
>33967_ssc-mir-122:mirbase
Length = 85
Score = 67.9 bits (34), Expect = 9e-13
Identities = 63/71 (88%), Gaps = 5/71 (7%)
Strand = Plus / Plus
Query: 3 cagagctgtggagtgtgacaatggtgtttgtatc--atctgtcgtcaaacgccattatca 60
||||||||||||||||||||||||||||||| || | || ||||||||||||||||
Sbjct: 7 cagagctgtggagtgtgacaatggtgtttgtgtccaaact---atcaaacgccattatca 63
Query: 61 cactaaatagc 71
|||||||||||
Sbjct: 64 cactaaatagc 74
>34584_fru-mir-122:mirbase
Length = 66
Score = 67.9 bits (34), Expect = 9e-13
Identities = 59/66 (89%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 6 agctgtggagtgtgacaatggtgtttgtatcatctgtcgtcaaacgccattatcacacta 65
|||| ||||||||||||||||||||||| || | | | |||||||||||||||||||||
Sbjct: 1 agctatggagtgtgacaatggtgtttgtttcctttctt-tcaaacgccattatcacacta 59
Query: 66 aatagc 71
||||||
Sbjct: 60 aatagc 65
>27006_eca-mir-122:mirbase
Length = 66
Score = 61.9 bits (31), Expect = 6e-11
Identities = 60/68 (88%), Gaps = 5/68 (7%)
Strand = Plus / Plus
Query: 6 agctgtggagtgtgacaatggtgtttgtatc--atctgtcgtcaaacgccattatcacac 63
|||||||||||||||||||||||||||| || | || |||||||||||||||||||
Sbjct: 1 agctgtggagtgtgacaatggtgtttgtgtccaaact---atcaaacgccattatcacac 57
Query: 64 taaatagc 71
||||||||
Sbjct: 58 taaatagc 65
>31837_mmu-mir-122:mirbase
Length = 66
Score = 61.9 bits (31), Expect = 6e-11
Identities = 60/68 (88%), Gaps = 5/68 (7%)
Strand = Plus / Plus
Query: 6 agctgtggagtgtgacaatggtgtttgtatc--atctgtcgtcaaacgccattatcacac 63
|||||||||||||||||||||||||||| || | | | |||||||||||||||||||
Sbjct: 1 agctgtggagtgtgacaatggtgtttgtgtccaaac---catcaaacgccattatcacac 57
Query: 64 taaatagc 71
||||||||
Sbjct: 58 taaatagc 65
>32716_rno-mir-122:mirbase
Length = 85
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 3 cagagctgtggagtgtgacaatggtgtttgt 33
||||||| |||||||||||||||||||||||
Sbjct: 7 cagagctctggagtgtgacaatggtgtttgt 37
>33091_rno-mir-3591:mirbase
Length = 109
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 3 cagagctgtggagtgtgacaatggtgtttgt 33
||||||| |||||||||||||||||||||||
Sbjct: 90 cagagctctggagtgtgacaatggtgtttgt 60
>25762_xtr-mir-122:mirbase
Length = 69
Score = 52.0 bits (26), Expect = 6e-08
Identities = 54/62 (87%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 5 gagctgtggagtgtgacaatggtgtttgtatcatctgtcgtcaaacgccattatcacact 64
||||| ||||||||||||||||||||||| ||| | ||||||||||||||||||||
Sbjct: 1 gagctatggagtgtgacaatggtgtttgtgtca-gagctatcaaacgccattatcacact 59
Query: 65 aa 66
||
Sbjct: 60 aa 61
>26685_cfa-mir-122:mirbase
Length = 58
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 45 tcaaacgccattatcacactaaata 69
|||||||||||||||||||||||||
Sbjct: 34 tcaaacgccattatcacactaaata 58
