miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00052;lin-4;BX539313.4/20117-20184 7955:Danio rerio (zebrafish)
Length = 68
Score = 135 bits (68), Expect = 1e-31
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 8 tctttgtccctgagacccttaacctgtgaggtcaaactaggtcacaggtgaggtcctcag 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctttgtccctgagacccttaacctgtgaggtcaaactaggtcacaggtgaggtcctcag 60
Query: 68 gaacaggg 75
||||||||
Sbjct: 61 gaacaggg 68
>RF00052;lin-4;BAAF04003428.1/11761-11694 8090:Oryzias latipes
(Japanese medaka)
Length = 68
Score = 95.6 bits (48), Expect = 8e-20
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 12 tgtccctgagacccttaacctgtgaggtcaaactaggtcacaggtgaggtcctcaggaac 71
||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||
Sbjct: 5 tgtccctgagacccttaacctgtgaagtcaaagcaggtcacaggtgaggtcctcgggaac 64
Query: 72 aggg 75
||||
Sbjct: 65 aggg 68
>RF00052;lin-4;BX005154.6/49745-49678 7955:Danio rerio (zebrafish)
Length = 68
Score = 65.9 bits (33), Expect = 7e-11
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 12 tgtccctgagacccttaacctgtgaggtcaaactaggtcacaggtgaggtcct 64
||||||||||||||||||||||||| ||| | |||||||||||||||||||
Sbjct: 5 tgtccctgagacccttaacctgtgatgtcttccaaggtcacaggtgaggtcct 57
>RF00052;lin-4;AAWZ01007717.1/33048-32980 28377:Anolis
carolinensis (green anole)
Length = 69
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 12 tgtccctgagacccttaacctgtgagg 38
|||||||||||||||||||||||||||
Sbjct: 5 tgtccctgagacccttaacctgtgagg 31
>RF00052;lin-4;CAAE01015022.1/41722-41789 99883:Tetraodon
nigroviridis
Length = 68
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 12 tgtccctgagacccttaacctgtga 36
|||||||||||||||||||||||||
Sbjct: 5 tgtccctgagacccttaacctgtga 29
>RF00052;lin-4;BAAF04118326.1/2083-2017 8090:Oryzias latipes
(Japanese medaka)
Length = 67
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 ttgtccctgagacccttaacctg 33
|||||||||||||||||||||||
Sbjct: 4 ttgtccctgagacccttaacctg 26
