miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00052;lin-4;BX005154.6/49745-49678 7955:Danio rerio (zebrafish)
Length = 68
Score = 135 bits (68), Expect = 1e-31
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 23 tctgtgtccctgagacccttaacctgtgatgtcttccaaggtcacaggtgaggtccttgg 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tctgtgtccctgagacccttaacctgtgatgtcttccaaggtcacaggtgaggtccttgg 60
Query: 83 gaacacgg 90
||||||||
Sbjct: 61 gaacacgg 68
>RF00052;lin-4;CAAE01015022.1/41722-41789 99883:Tetraodon
nigroviridis
Length = 68
Score = 83.8 bits (42), Expect = 4e-16
Identities = 57/62 (91%)
Strand = Plus / Plus
Query: 26 gtgtccctgagacccttaacctgtgatgtcttccaaggtcacaggtgaggtccttgggaa 85
||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct: 4 gtgtccctgagacccttaacctgtgataacgtgaaaggtcacaggtgaggtccttgggaa 63
Query: 86 ca 87
||
Sbjct: 64 ca 65
>RF00052;lin-4;BX539313.4/20117-20184 7955:Danio rerio (zebrafish)
Length = 68
Score = 65.9 bits (33), Expect = 1e-10
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 27 tgtccctgagacccttaacctgtgatgtcttccaaggtcacaggtgaggtcct 79
||||||||||||||||||||||||| ||| | |||||||||||||||||||
Sbjct: 5 tgtccctgagacccttaacctgtgaggtcaaactaggtcacaggtgaggtcct 57
>RF00052;lin-4;BAAF04003428.1/11761-11694 8090:Oryzias latipes
(Japanese medaka)
Length = 68
Score = 65.9 bits (33), Expect = 1e-10
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 27 tgtccctgagacccttaacctgtgatgtcttccaaggtcacaggtgaggtccttgggaac 86
||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||
Sbjct: 5 tgtccctgagacccttaacctgtgaagtcaaagcaggtcacaggtgaggtcctcgggaac 64
Query: 87 a 87
|
Sbjct: 65 a 65
>RF00052;lin-4;AAWZ01007717.1/33048-32980 28377:Anolis
carolinensis (green anole)
Length = 69
Score = 58.0 bits (29), Expect = 2e-08
Identities = 54/61 (88%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 27 tgtccctgagacccttaacctgtgatgtcttcca-aggtcacaggtgaggtccttgggaa 85
||||||||||||||||||||||||| | ||| |||||||||||||||| ||||||||
Sbjct: 5 tgtccctgagacccttaacctgtgaggaagcccagaggtcacaggtgaggttcttgggaa 64
Query: 86 c 86
|
Sbjct: 65 c 65
>RF00052;lin-4;BAAF04118326.1/2083-2017 8090:Oryzias latipes
(Japanese medaka)
Length = 67
Score = 58.0 bits (29), Expect = 2e-08
Identities = 54/61 (88%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 27 tgtccctgagacccttaacctgtgatgtcttccaaggtcacaggtgaggtccttgggaac 86
|||||||||||||||||||||| |||| | | |||||||||||||||||||||||||
Sbjct: 5 tgtccctgagacccttaacctgcgatgaatga-agggtcacaggtgaggtccttgggaac 63
Query: 87 a 87
|
Sbjct: 64 a 64
>RF00052;lin-4;ABRQ01276450.1/576-508 9813:Procavia capensis (cape
rock hyrax)
Length = 69
Score = 54.0 bits (27), Expect = 4e-07
Identities = 55/63 (87%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 23 tctgtgtccctgagaccctt-aacctgtgatgtcttccaaggtcacaggtgaggtccttg 81
|||| ||||||||||||||| ||||||||| | |||| ||||||||||||||| ||||
Sbjct: 1 tctgggtccctgagaccctttaacctgtgaggatgtccagggtcacaggtgaggttcttg 60
Query: 82 gga 84
|||
Sbjct: 61 gga 63
