miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00701;mir-126;EU221177.1/65651-65724 8030:Salmo salar (Atlantic
salmon)
Length = 74
Score = 123 bits (62), Expect = 5e-28
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 26 cattattacttttggtacgcgctaggccagactcaaactcgtaccgtgagtaataatgca 85
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 9 cattattacttttggtacgcgctaggccagtctcaaactcgtaccgtgagtaataatgca 68
Query: 86 ctgtgg 91
||||||
Sbjct: 69 ctgtgg 74
>RF00701;mir-126;BAAE01255215.1/350-278 8090:Oryzias latipes
(Japanese medaka)
Length = 73
Score = 91.7 bits (46), Expect = 2e-18
Identities = 62/66 (93%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 23 gtccattattacttttggtacgcgctaggccagactcaaactcgtaccgtgagtaataat 82
||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||
Sbjct: 6 gtccattattacttttggtacgcgctatgccactctc-aactcgtaccgtgagtaataat 64
Query: 83 gcactg 88
||||||
Sbjct: 65 gcactg 70
>RF00701;mir-126;AAWZ01045019.1/473-401 28377:Anolis carolinensis
(green anole)
Length = 73
Score = 75.8 bits (38), Expect = 1e-13
Identities = 57/62 (91%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 23 gtccattattacttttggtacgcgctaggccagactcaaactcgtaccgtgagtaataat 82
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 6 gtccattattacttttggtacgcgctgtgccact-tcaaactcgtaccgtgagtaataat 64
Query: 83 gc 84
||
Sbjct: 65 gc 66
>RF00701;mir-126;AAVX01058805.1/2145-2073 7868:Callorhinchus milii
(ghost shark)
Length = 73
Score = 71.9 bits (36), Expect = 1e-12
Identities = 64/72 (88%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 20 acagtccattattacttttggtacgcgctaggccagactcaaactcgtaccgtgagtaat 79
|||| |||||||||||||||||||||||| | || ||||||||||||||||||||||
Sbjct: 3 acagcccattattacttttggtacgcgctgtgacact-tcaaactcgtaccgtgagtaat 61
Query: 80 aatgcactgtgg 91
||||||| ||||
Sbjct: 62 aatgcacagtgg 73
>RF00701;mir-126;AAFR03005634.1/12031-12103 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 73
Score = 69.9 bits (35), Expect = 6e-12
Identities = 54/59 (91%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 26 cattattacttttggtacgcgctaggccagactcaaactcgtaccgtgagtaataatgc 84
||||||||||||||||||||||| | || | |||||||||||||||||||||||||||
Sbjct: 9 cattattacttttggtacgcgctgtgacaca-tcaaactcgtaccgtgagtaataatgc 66
>RF00701;mir-126;AAPN01325297.1/2349-2421 9258:Ornithorhynchus
anatinus (platypus)
Length = 73
Score = 63.9 bits (32), Expect = 4e-10
Identities = 54/60 (90%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 25 ccattattacttttggtacgcgctaggccagactcaaactcgtaccgtgagtaataatgc 84
|||||||||||||||||||||||| | | | |||||||||||||||||||||||||||
Sbjct: 8 ccattattacttttggtacgcgctgtgac-gcttcaaactcgtaccgtgagtaataatgc 66
>RF00701;mir-126;ABRQ01610658.1/2102-2030 9813:Procavia capensis
(cape rock hyrax)
Length = 73
Score = 61.9 bits (31), Expect = 1e-09
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 26 cattattacttttggtacgcgctaggccagactcaaactcgtaccgtgagtaataatgc 84
||||||||||||||||||||||| | || |||||||||||||||||||||||||||
Sbjct: 9 cattattacttttggtacgcgctgtgacacg-tcaaactcgtaccgtgagtaataatgc 66
>RF00701;mir-126;AAQR01724391.1/772-699 30611:Otolemur garnettii
(small-eared galago)
Length = 74
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 26 cattattacttttggtacgcgct 48
|||||||||||||||||||||||
Sbjct: 9 cattattacttttggtacgcgct 31
