miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00649;mir-128;CAAK05043402.1/2817-2901 7955:Danio rerio
(zebrafish)
Length = 85
Score = 168 bits (85), Expect = 1e-41
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 17 tcagtagtaggacagggggccgtttctactgtcagagatgctgccactcgtctcacagtg 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcagtagtaggacagggggccgtttctactgtcagagatgctgccactcgtctcacagtg 60
Query: 77 aaccggtctcttttcctgctattca 101
|||||||||||||||||||||||||
Sbjct: 61 aaccggtctcttttcctgctattca 85
>RF00649;mir-128;AADN02001307.1/37422-37505 9031:Gallus gallus
(chicken)
Length = 84
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 66 gtctcacagtgaaccggtctcttttcctgct 96
|||||||||||||||||||||||||||||||
Sbjct: 49 gtctcacagtgaaccggtctcttttcctgct 79
>RF00649;mir-128;BAAE01144804.1/712-628 8090:Oryzias latipes
(Japanese medaka)
Length = 85
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 66 gtctcacagtgaaccggtctcttttcctgct 96
|||||||||||||||||||||||||||||||
Sbjct: 50 gtctcacagtgaaccggtctcttttcctgct 80
>RF00649;mir-128;CAAB01001230.1/17567-17484 31033:Takifugu
rubripes
Length = 84
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 67 tctcacagtgaaccggtctcttttcc 92
||||||||||||||||||||||||||
Sbjct: 50 tctcacagtgaaccggtctcttttcc 75
>RF00649;mir-128;ABPJ01009935.1/1344-1261 35575:Mchenga conophoros
Length = 84
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 67 tctcacagtgaaccggtctcttttcc 92
||||||||||||||||||||||||||
Sbjct: 50 tctcacagtgaaccggtctcttttcc 75
>RF00649;mir-128;BAAF04005951.1/319-236 8090:Oryzias latipes
(Japanese medaka)
Length = 84
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 67 tctcacagtgaaccggtctcttttcc 92
||||||||||||||||||||||||||
Sbjct: 50 tctcacagtgaaccggtctcttttcc 75
>RF00649;mir-128;AAPN01333292.1/110-29 9258:Ornithorhynchus
anatinus (platypus)
Length = 82
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 66 gtctcacagtgaaccggtctctttt 90
|||||||||||||||||||||||||
Sbjct: 47 gtctcacagtgaaccggtctctttt 71
>RF00649;mir-128;AAPN01083252.1/12750-12833 9258:Ornithorhynchus
anatinus (platypus)
Length = 84
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 66 gtctcacagtgaaccggtctcttt 89
||||||||||||||||||||||||
Sbjct: 49 gtctcacagtgaaccggtctcttt 72
>RF00649;mir-128;AAYZ01088765.1/13723-13805 9978:Ochotona princeps
(American pika)
Length = 83
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 66 gtctcacagtgaaccggtctcttt 89
||||||||||||||||||||||||
Sbjct: 48 gtctcacagtgaaccggtctcttt 71
>RF00649;mir-128;AADN02016954.1/107412-107493 9031:Gallus gallus
(chicken)
Length = 82
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 67 tctcacagtgaaccggtctctttt 90
||||||||||||||||||||||||
Sbjct: 48 tctcacagtgaaccggtctctttt 71
>RF00649;mir-128;CAAK05046368.1/14745-14829 7955:Danio rerio
(zebrafish)
Length = 85
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 67 tctcacagtgaaccggtctctttt 90
||||||||||||||||||||||||
Sbjct: 51 tctcacagtgaaccggtctctttt 74
>RF00649;mir-128;AAVX01050759.1/9619-9536 7868:Callorhinchus milii
(ghost shark)
Length = 84
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 66 gtctcacagtgaaccggtctcttt 89
||||||||||||||||||||||||
Sbjct: 49 gtctcacagtgaaccggtctcttt 72
