miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00246;mir-135;BX784025.12/48197-48108 7955:Danio rerio
(zebrafish)
Length = 90
Score = 163 bits (82), Expect = 4e-40
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 1 ctctttgccccgtatggctttttattcctatctgagaattgctcaggactcatataggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 ctctttgccccgtatggctttttattcctatctgagaattgctcaggactcatataggga 63
Query: 61 tggaagccatgcagggctgggg 82
||||||||||||||||||||||
Sbjct: 64 tggaagccatgcagggctgggg 85
>RF00246;mir-135;AANH01002735.1/65484-65395 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 12 gtatggctttttattcctatctga 35
||||||||||||||||||||||||
Sbjct: 16 gtatggctttttattcctatctga 39
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 tcatatagggatggaagccatgca 73
||||||||||||||||||||||||
Sbjct: 53 tcatatagggatggaagccatgca 76
>RF00246;mir-135;BAAE01233743.1/1592-1680 8090:Oryzias latipes
(Japanese medaka)
Length = 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 12 gtatggctttttattcctatctga 35
||||||||||||||||||||||||
Sbjct: 15 gtatggctttttattcctatctga 38
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 tcatatagggatggaagccatgca 73
||||||||||||||||||||||||
Sbjct: 52 tcatatagggatggaagccatgca 75
