miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00731;mir-155;CU571081.7/40496-40433 7955:Danio rerio
(zebrafish)
Length = 64
Score = 127 bits (64), Expect = 2e-29
Identities = 64/64 (100%)
Strand = Plus / Plus
Query: 8 ggtttaatgctaatcgtgataggggtttagtgctgatgaacacctatgctgttagcatta 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtttaatgctaatcgtgataggggtttagtgctgatgaacacctatgctgttagcatta 60
Query: 68 atct 71
||||
Sbjct: 61 atct 64
>RF00731;mir-155;AAPN01114009.1/559-624 9258:Ornithorhynchus
anatinus (platypus)
Length = 66
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 ttaatgctaatcgtgataggggttt 35
|||||||||||||||||||||||||
Sbjct: 4 ttaatgctaatcgtgataggggttt 28
>RF00731;mir-155;AAFR03036553.1/2910-2839 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 72
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 ttaatgctaatcgtgataggggttt 35
|||||||||||||||||||||||||
Sbjct: 4 ttaatgctaatcgtgataggggttt 28
>RF00731;mir-155;AAGU02298634.1/113-176 9785:Loxodonta africana
(African savanna elephant)
Length = 64
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 ttaatgctaatcgtgataggggttt 35
|||||||||||||||||||||||||
Sbjct: 4 ttaatgctaatcgtgataggggttt 28
>RF00731;mir-155;ABRQ01311671.1/11595-11658 9813:Procavia capensis
(cape rock hyrax)
Length = 64
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 ttaatgctaatcgtgataggggttt 35
|||||||||||||||||||||||||
Sbjct: 4 ttaatgctaatcgtgataggggttt 28
>RF00731;mir-155;AADN02010688.1/48715-48779 9031:Gallus gallus
(chicken)
Length = 65
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 ttaatgctaatcgtgataggggttt 35
|||||||||||||||||||||||||
Sbjct: 4 ttaatgctaatcgtgataggggttt 28
>RF00731;mir-155;AANH01000396.1/166544-166481 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 64
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 ttaatgctaatcgtgataggggttt 35
|||||||||||||||||||||||||
Sbjct: 4 ttaatgctaatcgtgataggggttt 28
>RF00731;mir-155;CAAE01014581.1/3640492-3640429 99883:Tetraodon
nigroviridis
Length = 64
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ttaatgctaatcgtgataggggtt 34
||||||||||||||||||||||||
Sbjct: 4 ttaatgctaatcgtgataggggtt 27
>RF00731;mir-155;CAAB01005608.1/1273-1335 31033:Takifugu rubripes
Length = 63
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ttaatgctaatcgtgataggggtt 34
||||||||||||||||||||||||
Sbjct: 4 ttaatgctaatcgtgataggggtt 27
>RF00731;mir-155;BAAE01057424.1/197-134 8090:Oryzias latipes
(Japanese medaka)
Length = 64
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 ttaatgctaatcgtgataggggtt 34
||||||||||||||||||||||||
Sbjct: 4 ttaatgctaatcgtgataggggtt 27
>RF00731;mir-155;AY096003.1/159-223 10090:Mus musculus (house
mouse)
Length = 65
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 ttaatgctaatcgtgataggggttt 35
||||||||||| |||||||||||||
Sbjct: 4 ttaatgctaattgtgataggggttt 28
>RF00731;mir-155;AAVX01187381.1/1334-1270 7868:Callorhinchus milii
(ghost shark)
Length = 65
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 10 tttaatgctaatcgtgataggggtt 34
|||||||||||| ||||||||||||
Sbjct: 3 tttaatgctaattgtgataggggtt 27
