miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00076;mir-181;CAAK05046427.1/2246-2169 7955:Danio rerio
(zebrafish)
Length = 78
Score = 113 bits (57), Expect = 4e-25
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 6 cctcagtgaacattcaacgctgtcggtgagtttgagctaaatggnnnnnnnccatcgacc 65
|||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1 cctcagtgaacattcaacgctgtcggtgagtttgagctaaatggaaaaaaaccatcgacc 60
Query: 66 gttgattgtaccctgcgg 83
||||||||||||||||||
Sbjct: 61 gttgattgtaccctgcgg 78
>RF00076;mir-181;BAAE01064819.1/183-106 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 81.8 bits (41), Expect = 1e-15
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 11 gtgaacattcaacgctgtcggtgagtttgagctaaatggnnnnnnnccatcgaccgttga 70
||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 6 gtgaacattcaacgctgtcggtgagtttgagctaaattgaagaaaaccatcgaccgttga 65
Query: 71 ttgtaccctg 80
|||||||||
Sbjct: 66 ctgtaccctg 75
>RF00076;mir-181;AADN02026326.1/5940-5866 9031:Gallus gallus
(chicken)
Length = 75
Score = 67.9 bits (34), Expect = 2e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 8 tcagtgaacattcaacgctgtcggtgagtttgag 41
||||||||||||||||||||||||||||||||||
Sbjct: 3 tcagtgaacattcaacgctgtcggtgagtttgag 36
>RF00076;mir-181;AANH01010005.1/225761-225835 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 75
Score = 65.9 bits (33), Expect = 7e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 11 gtgaacattcaacgctgtcggtgagtttgagct 43
|||||||||||||||||||||||||||||||||
Sbjct: 6 gtgaacattcaacgctgtcggtgagtttgagct 38
>RF00076;mir-181;AAWZ01041904.1/21191-21117 28377:Anolis
carolinensis (green anole)
Length = 75
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 8 tcagtgaacattcaacgctgtcggtgagtttg 39
||||||||||||||||||||||||||||||||
Sbjct: 3 tcagtgaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;ABQF01033784.1/94537-94612 59729:Taeniopygia
guttata
Length = 76
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 8 tcagtgaacattcaacgctgtcggtgagtttg 39
||||||||||||||||||||||||||||||||
Sbjct: 3 tcagtgaacattcaacgctgtcggtgagtttg 34
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 ccatcgaccgttgattgtaccct 79
|||||||||||||||||||||||
Sbjct: 50 ccatcgaccgttgattgtaccct 72
>RF00076;mir-181;AAVX01524458.1/119-46 7868:Callorhinchus milii
(ghost shark)
Length = 74
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 8 tcagtgaacattcaacgctgtcggtgagtttg 39
||||||||||||||||||||||||||||||||
Sbjct: 3 tcagtgaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;AAVX01060902.1/6914-6990 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 8 tcagtgaacattcaacgctgtcggtgagtttg 39
||||||||||||||||||||||||||||||||
Sbjct: 3 tcagtgaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;AAFR03041358.1/50589-50664 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 76
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 8 tcagtgaacattcaacgctgtcggtgagttt 38
|||||||||||||||||||||||||||||||
Sbjct: 3 tcagtgaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;ABQO010301058.1/1056-1132 9315:Macropus eugenii
(tammar wallaby)
Length = 77
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 13 gaacattcaacgctgtcggtgagtttgagc 42
||||||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttgagc 37
>RF00076;mir-181;CAAE01007899.1/3116-3043 99883:Tetraodon
nigroviridis
Length = 74
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 11 gtgaacattcaacgctgtcggtgagtttga 40
||||||||||||||||||||||||||||||
Sbjct: 6 gtgaacattcaacgctgtcggtgagtttga 35
>RF00076;mir-181;AANH01003633.1/162880-162804 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 9 cagtgaacattcaacgctgtcggtgagttt 38
||||||||||||||||||||||||||||||
Sbjct: 4 cagtgaacattcaacgctgtcggtgagttt 33
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 ccatcgaccgttgattgtaccctg 80
||||||||||||||||||||||||
Sbjct: 51 ccatcgaccgttgattgtaccctg 74
>RF00076;mir-181;AAPN01414527.1/5237-5163 9258:Ornithorhynchus
anatinus (platypus)
Length = 75
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 13 gaacattcaacgctgtcggtgagtttgag 41
|||||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttgag 36
>RF00076;mir-181;BX649502.4/41327-41254 7955:Danio rerio
(zebrafish)
Length = 74
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 7 ctcagtgaacattcaacgctgtcggtgagtttg 39
||||| |||||||||||||||||||||||||||
Sbjct: 2 ctcagagaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;AANH01005494.1/52551-52630 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 80
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 6 cctcagtgaacattcaacgctgtcggtgagttt 38
|||| ||||||||||||||||||||||||||||
Sbjct: 1 cctcggtgaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;AAVX01605662.1/457-382 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 8 tcagtgaacattcaacgctgtcggtgagtttga 40
|||| ||||||||||||||||||||||||||||
Sbjct: 3 tcagggaacattcaacgctgtcggtgagtttga 35
>RF00076;mir-181;ABRQ01199017.1/7675-7601 9813:Procavia capensis
(cape rock hyrax)
Length = 75
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 12 tgaacattcaacgctgtcggtgagtttg 39
||||||||||||||||||||||||||||
Sbjct: 8 tgaacattcaacgctgtcggtgagtttg 35
>RF00076;mir-181;CU914488.12/799-875 7955:Danio rerio (zebrafish)
Length = 77
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 11 gtgaacattcaacgctgtcggtgagttt 38
||||||||||||||||||||||||||||
Sbjct: 6 gtgaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;BAAE01046132.1/387-313 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 13 gaacattcaacgctgtcggtgagtttgagcta 44
||||||||||||||||||||||||||| ||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttgtgcta 39
>RF00076;mir-181;AAPN01204145.1/856-780 9258:Ornithorhynchus
anatinus (platypus)
Length = 77
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 13 gaacattcaacgctgtcggtgagtttg 39
|||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;ABRR01288494.1/77-2 30538:Lama pacos (alpaca)
Length = 76
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 13 gaacattcaacgctgtcggtgagtttg 39
|||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;ABRO01503714.1/705-629 10020:Dipodomys ordii
(Ord's kangaroo rat)
Length = 77
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 13 gaacattcaacgctgtcggtgagtttg 39
|||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;CAAE01007782.1/1794-1718 99883:Tetraodon
nigroviridis
Length = 77
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 13 gaacattcaacgctgtcggtgagtttg 39
|||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;ABPN01054789.1/181-255 163638:Rhamphochromis esox
Length = 75
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 13 gaacattcaacgctgtcggtgagtttg 39
|||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;AANH01011358.1/4650-4577 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 74
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 13 gaacattcaacgctgtcggtgagtttg 39
|||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;BAAE01247698.1/2692-2765 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 13 gaacattcaacgctgtcggtgagtttg 39
|||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;CR407590.7/46720-46647 7955:Danio rerio
(zebrafish)
Length = 74
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 gaacattcaacgctgtcggtgagttt 38
||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;CAAB01002295.1/30499-30571 31033:Takifugu
rubripes
Length = 73
Score = 52.0 bits (26), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 gaacattcaacgctgtcggtgagtttga 40
|||||||||| |||||||||||||||||
Sbjct: 8 gaacattcaamgctgtcggtgagtttga 35
>RF00076;mir-181;CAAB01002581.1/17658-17586 31033:Takifugu
rubripes
Length = 73
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 gaacattcaacgctgtcggtgagttt 38
||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;BAAE01266276.1/154-232 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 14 aacattcaacgctgtcggtgagtttg 39
||||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagtttg 34
>RF00076;mir-181;AAWZ01014044.1/10482-10407 28377:Anolis
carolinensis (green anole)
Length = 76
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 aacattcaacgctgtcggtgagttt 38
|||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;CAAB01009059.1/35-115 31033:Takifugu rubripes
Length = 81
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 aacattcaacgctgtcggtgagttt 38
|||||||||||||||||||||||||
Sbjct: 9 aacattcaacgctgtcggtgagttt 33
>RF00076;mir-181;AAIY01317332.1/8-77 9371:Echinops telfairi (small
Madagascar hedgehog)
Length = 70
Score = 46.1 bits (23), Expect = 7e-05
Identities = 30/31 (96%), Gaps = 1/31 (3%)
Strand = Plus / Plus
Query: 7 ctcagtgaacattcaacgctgtcggtgagtt 37
|||||||||||| ||||||||||||||||||
Sbjct: 2 ctcagtgaacat-caacgctgtcggtgagtt 31
