miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00674;mir-187;BX927241.19/109900-110007 7955:Danio rerio
(zebrafish)
Length = 108
Score = 176 bits (89), Expect = 3e-44
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 1 tgacctgtggctgggccaggggctgcaacacaggacatgggagctgtctctcactcccgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 tgacctgtggctgggccaggggctgcaacacaggacatgggagctgtctctcactcccgc 69
Query: 61 tcgtgtcttgtgttgcagccagtggaacg 89
|||||||||||||||||||||||||||||
Sbjct: 70 tcgtgtcttgtgttgcagccagtggaacg 98
>RF00674;mir-187;CAAB01000566.1/61799-61691 31033:Takifugu
rubripes
Length = 109
Score = 85.7 bits (43), Expect = 9e-17
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 8 tggctgggccaggggctgcaacacaggacatgggagctgtctctcactcccgctcgtgtc 67
|||| ||||||||||||||||||||||||||||| || |||| | |||||||||||
Sbjct: 18 tggccgggccaggggctgcaacacaggacatgggtcatgcctctgcccaccgctcgtgtc 77
Query: 68 ttgtgttgcagccagtgga 86
|||||||||||||||||||
Sbjct: 78 ttgtgttgcagccagtgga 96
>RF00674;mir-187;BAAF04062858.1/307-199 8090:Oryzias latipes
(Japanese medaka)
Length = 109
Score = 85.7 bits (43), Expect = 9e-17
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 12 tgggccaggggctgcaacacaggacatgggagctgtctctcactcccgctcgtgtcttgt 71
|||||||| ||||||||||||||||||||| ||| |||| ||||||||||||||||
Sbjct: 22 tgggccagcggctgcaacacaggacatgggtcctgcttctcctccccgctcgtgtcttgt 81
Query: 72 gttgcagccagtgga 86
|||||||||||||||
Sbjct: 82 gttgcagccagtgga 96
>RF00674;mir-187;AAPN01052341.1/8485-8382 9258:Ornithorhynchus
anatinus (platypus)
Length = 104
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 ctcgtgtcttgtgttgcagccag 82
|||||||||||||||||||||||
Sbjct: 65 ctcgtgtcttgtgttgcagccag 87
>RF00674;mir-187;AAWZ01027996.1/55264-55367 28377:Anolis
carolinensis (green anole)
Length = 104
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 ctcgtgtcttgtgttgcagccag 82
|||||||||||||||||||||||
Sbjct: 65 ctcgtgtcttgtgttgcagccag 87
>RF00674;mir-187;AADN02008126.1/227633-227736 9031:Gallus gallus
(chicken)
Length = 104
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 ctcgtgtcttgtgttgcagccag 82
|||||||||||||||||||||||
Sbjct: 65 ctcgtgtcttgtgttgcagccag 87
