miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00672;mir-190;AANN01313225.1/1014-1098 9365:Erinaceus europaeus
(western European hedgehog)
Length = 85
Score = 127 bits (64), Expect = 4e-29
Identities = 76/80 (95%)
Strand = Plus / Plus
Query: 32 tgcaggcctctgtttgatatgtttgatatattaggttgttattctgtccaactatatatc 91
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 tgcaggcctctgtgtgatatgtttgatatattaggttgttatttgatccaactatatatc 60
Query: 92 aaacatattcctacagtgtc 111
||||||||||||||||||||
Sbjct: 61 aaacatattcctacagtgtc 80
>RF00672;mir-190;BAAE01125523.1/2749-2664 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 115 bits (58), Expect = 1e-25
Identities = 77/82 (93%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 32 tgcaggcctctgtttgatatgtttgatatattaggttgttattctgtcc-aactatatat 90
|||||| |||||| ||||||||||||||||||||||||| |||| |||| ||||||||||
Sbjct: 1 tgcagggctctgtctgatatgtttgatatattaggttgtaattcagtcccaactatatat 60
Query: 91 caaacatattcctacagtgtcc 112
||||||||||||||||||||||
Sbjct: 61 caaacatattcctacagtgtcc 82
>RF00672;mir-190;AAVX01574962.1/139-55 7868:Callorhinchus milii
(ghost shark)
Length = 85
Score = 105 bits (53), Expect = 1e-22
Identities = 71/77 (92%)
Strand = Plus / Plus
Query: 39 ctctgtttgatatgtttgatatattaggttgttattctgtccaactatatatcaaacata 98
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 8 ctctgtgtgatatgtttgatatattaggttgttattaaagccaactatatatcaaacata 67
Query: 99 ttcctacagtgtcctgc 115
|||||| ||||||||||
Sbjct: 68 ttcctatagtgtcctgc 84
