miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34628_fru-mir-200a:mirbase
Length = 83
Score = 83.8 bits (42), Expect = 2e-17
Identities = 67/74 (90%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 13 ccatcttaccggacagtgctggactgtataactgtt-ttctaacactgtctggtaacgat 71
|||||||||| |||||||||||| |||| |||||| |||||||||||||||||||||||
Sbjct: 10 ccatcttacccgacagtgctggattgtactactgttgttctaacactgtctggtaacgat 69
Query: 72 gtttgttgggtgac 85
|||| ||||||||
Sbjct: 70 gttttctgggtgac 83
>34775_tni-mir-200a:mirbase
Length = 62
Score = 67.9 bits (34), Expect = 1e-12
Identities = 56/62 (90%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 14 catcttaccggacagtgctggactgtataactgtt-ttctaacactgtctggtaacgatg 72
||||||||| |||||||||||| | || |||||| ||||||||||||||||||||||||
Sbjct: 1 catcttacctgacagtgctggattatactactgttgttctaacactgtctggtaacgatg 60
Query: 73 tt 74
||
Sbjct: 61 tt 62
>25820_xtr-mir-200a:mirbase
Length = 89
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 47 ttttctaacactgtctggtaacgatgttt 75
|||||||||||||||||||||||||||||
Sbjct: 48 ttttctaacactgtctggtaacgatgttt 76
>25991_gga-mir-200a:mirbase
Length = 87
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 49 ttctaacactgtctggtaacgatgttt 75
|||||||||||||||||||||||||||
Sbjct: 49 ttctaacactgtctggtaacgatgttt 75
>26498_tgu-mir-200a:mirbase
Length = 93
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 50 tctaacactgtctggtaacgatgttt 75
||||||||||||||||||||||||||
Sbjct: 59 tctaacactgtctggtaacgatgttt 84
>27418_mdo-mir-200a:mirbase
Length = 86
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 50 tctaacactgtctggtaacgatgttt 75
||||||||||||||||||||||||||
Sbjct: 49 tctaacactgtctggtaacgatgttt 74
>26759_cfa-mir-200a:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 50 tctaacactgtctggtaacgatgtt 74
|||||||||||||||||||||||||
Sbjct: 52 tctaacactgtctggtaacgatgtt 76
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 catcttaccggacagtgctgga 35
||||||||||||||||||||||
Sbjct: 16 catcttaccggacagtgctgga 37
>27087_eca-mir-200a:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 50 tctaacactgtctggtaacgatgtt 74
|||||||||||||||||||||||||
Sbjct: 52 tctaacactgtctggtaacgatgtt 76
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 catcttaccggacagtgctgga 35
||||||||||||||||||||||
Sbjct: 16 catcttaccggacagtgctgga 37
>27798_mml-mir-200a:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 50 tctaacactgtctggtaacgatgtt 74
|||||||||||||||||||||||||
Sbjct: 52 tctaacactgtctggtaacgatgtt 76
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 catcttaccggacagtgctgga 35
||||||||||||||||||||||
Sbjct: 16 catcttaccggacagtgctgga 37
>28518_hsa-mir-200a:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 50 tctaacactgtctggtaacgatgtt 74
|||||||||||||||||||||||||
Sbjct: 52 tctaacactgtctggtaacgatgtt 76
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 catcttaccggacagtgctgga 35
||||||||||||||||||||||
Sbjct: 16 catcttaccggacagtgctgga 37
>30279_ptr-mir-200a:mirbase
Length = 89
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 50 tctaacactgtctggtaacgatgtt 74
|||||||||||||||||||||||||
Sbjct: 51 tctaacactgtctggtaacgatgtt 75
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 catcttaccggacagtgctgga 35
||||||||||||||||||||||
Sbjct: 15 catcttaccggacagtgctgga 36
>30897_ppy-mir-200a:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 50 tctaacactgtctggtaacgatgtt 74
|||||||||||||||||||||||||
Sbjct: 52 tctaacactgtctggtaacgatgtt 76
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 catcttaccggacagtgctgga 35
||||||||||||||||||||||
Sbjct: 16 catcttaccggacagtgctgga 37
>31528_oan-mir-200a:mirbase
Length = 114
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 50 tctaacactgtctggtaacgatgtt 74
|||||||||||||||||||||||||
Sbjct: 64 tctaacactgtctggtaacgatgtt 88
>31923_mmu-mir-200a:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 50 tctaacactgtctggtaacgatgtt 74
|||||||||||||||||||||||||
Sbjct: 52 tctaacactgtctggtaacgatgtt 76
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 catcttaccggacagtgctgga 35
||||||||||||||||||||||
Sbjct: 16 catcttaccggacagtgctgga 37
>32788_rno-mir-200a:mirbase
Length = 89
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 50 tctaacactgtctggtaacgatgtt 74
|||||||||||||||||||||||||
Sbjct: 52 tctaacactgtctggtaacgatgtt 76
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 catcttaccggacagtgctgga 35
||||||||||||||||||||||
Sbjct: 16 catcttaccggacagtgctgga 37
>33035_rno-mir-3548:mirbase
Length = 120
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 50 tctaacactgtctggtaacgatgtt 74
|||||||||||||||||||||||||
Sbjct: 51 tctaacactgtctggtaacgatgtt 27
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 14 catcttaccggacagtgctgga 35
||||||||||||||||||||||
Sbjct: 87 catcttaccggacagtgctgga 66
>33278_bta-mir-200a:mirbase
Length = 86
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 50 tctaacactgtctggtaacgatgtt 74
|||||||||||||||||||||||||
Sbjct: 50 tctaacactgtctggtaacgatgtt 74
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 catcttaccggacagtgctgga 35
||||||||||||||||||||||
Sbjct: 14 catcttaccggacagtgctgga 35
>34310_dre-mir-141:mirbase
Length = 83
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 49 ttctaacactgtctggtaacgatg 72
||||||||||||||||||||||||
Sbjct: 48 ttctaacactgtctggtaacgatg 71
>25328_csa-mir-141:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 49 ttctaacactgtctggtaacgatg 72
||||||||||||||||||| ||||
Sbjct: 45 ttctaacactgtctggtaaagatg 68
>27389_mdo-mir-141:mirbase
Length = 64
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 49 ttctaacactgtctggtaacgatg 72
||||||||||||||||||| ||||
Sbjct: 38 ttctaacactgtctggtaaagatg 61
>24694_bfl-mir-200c:mirbase
Length = 95
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 50 tctaacactgtctggtaacgatg 72
|||||||||||||||||| ||||
Sbjct: 56 tctaacactgtctggtaatgatg 78
>24837_cin-mir-141:mirbase
Length = 75
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 50 tctaacactgtctggtaacgatg 72
|||||||||||||||||| ||||
Sbjct: 38 tctaacactgtctggtaaagatg 60
