miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34636_fru-mir-214:mirbase
Length = 99
Score = 125 bits (63), Expect = 6e-30
Identities = 76/79 (96%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 18 tgtctgcctgtctacacttgctgtgcagaacttcctgcacctgtacagcaggcacagaca 77
||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||
Sbjct: 22 tgtctgcctgtctacacttgctgtgcagaccttc-tgctcctgtacagcaggcacagaca 80
Query: 78 ggcagacagatggcagccc 96
|||||||||||||||||||
Sbjct: 81 ggcagacagatggcagccc 99
>34784_tni-mir-214:mirbase
Length = 88
Score = 125 bits (63), Expect = 6e-30
Identities = 76/79 (96%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 18 tgtctgcctgtctacacttgctgtgcagaacttcctgcacctgtacagcaggcacagaca 77
||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||
Sbjct: 7 tgtctgcctgtctacacttgctgtgcagaccttc-tgctcctgtacagcaggcacagaca 65
Query: 78 ggcagacagatggcagccc 96
|||||||||||||||||||
Sbjct: 66 ggcagacagatggcagccc 84
>25833_xtr-mir-214:mirbase
Length = 107
Score = 99.6 bits (50), Expect = 4e-22
Identities = 63/66 (95%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 18 tgtctgcctgtctacacttgctgtgcagaacttcct-gcacctgtacagcaggcacagac 76
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 23 tgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtacagcaggcacagac 82
Query: 77 aggcag 82
||||||
Sbjct: 83 aggcag 88
>26509_tgu-mir-214:mirbase
Length = 92
Score = 99.6 bits (50), Expect = 4e-22
Identities = 63/66 (95%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 18 tgtctgcctgtctacacttgctgtgcagaacttcct-gcacctgtacagcaggcacagac 76
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 16 tgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtacagcaggcacagac 75
Query: 77 aggcag 82
||||||
Sbjct: 76 aggcag 81
>27428_mdo-mir-214:mirbase
Length = 110
Score = 99.6 bits (50), Expect = 4e-22
Identities = 63/66 (95%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 18 tgtctgcctgtctacacttgctgtgcagaacttcct-gcacctgtacagcaggcacagac 76
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 26 tgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtacagcaggcacagac 85
Query: 77 aggcag 82
||||||
Sbjct: 86 aggcag 91
>31534_oan-mir-214:mirbase
Length = 118
Score = 99.6 bits (50), Expect = 4e-22
Identities = 63/66 (95%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 18 tgtctgcctgtctacacttgctgtgcagaacttcct-gcacctgtacagcaggcacagac 76
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 28 tgtctgcctgtctacacttgctgtgcagaacatcctctcacctgtacagcaggcacagac 87
Query: 77 aggcag 82
||||||
Sbjct: 88 aggcag 93
>26773_cfa-mir-214:mirbase
Length = 110
Score = 91.7 bits (46), Expect = 9e-20
Identities = 62/66 (93%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 18 tgtctgcctgtctacacttgctgtgcagaacttcc-tgcacctgtacagcaggcacagac 76
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 26 tgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacagac 85
Query: 77 aggcag 82
||||||
Sbjct: 86 aggcag 91
>27519_age-mir-214:mirbase
Length = 110
Score = 91.7 bits (46), Expect = 9e-20
Identities = 62/66 (93%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 18 tgtctgcctgtctacacttgctgtgcagaacttcc-tgcacctgtacagcaggcacagac 76
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 26 tgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacagac 85
Query: 77 aggcag 82
||||||
Sbjct: 86 aggcag 91
>27625_sla-mir-214:mirbase
Length = 110
Score = 91.7 bits (46), Expect = 9e-20
Identities = 62/66 (93%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 18 tgtctgcctgtctacacttgctgtgcagaacttcc-tgcacctgtacagcaggcacagac 76
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 26 tgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacagac 85
Query: 77 aggcag 82
||||||
Sbjct: 86 aggcag 91
>27809_mml-mir-214:mirbase
Length = 110
Score = 91.7 bits (46), Expect = 9e-20
Identities = 62/66 (93%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 18 tgtctgcctgtctacacttgctgtgcagaacttcc-tgcacctgtacagcaggcacagac 76
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 26 tgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacagac 85
Query: 77 aggcag 82
||||||
Sbjct: 86 aggcag 91
>28236_mne-mir-214:mirbase
Length = 110
Score = 91.7 bits (46), Expect = 9e-20
Identities = 62/66 (93%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 18 tgtctgcctgtctacacttgctgtgcagaacttcc-tgcacctgtacagcaggcacagac 76
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 26 tgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacagac 85
Query: 77 aggcag 82
||||||
Sbjct: 86 aggcag 91
>28330_ggo-mir-214:mirbase
Length = 110
Score = 91.7 bits (46), Expect = 9e-20
Identities = 62/66 (93%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 18 tgtctgcctgtctacacttgctgtgcagaacttcc-tgcacctgtacagcaggcacagac 76
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 26 tgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacagac 85
Query: 77 aggcag 82
||||||
Sbjct: 86 aggcag 91
>28531_hsa-mir-214:mirbase
Length = 110
Score = 91.7 bits (46), Expect = 9e-20
Identities = 62/66 (93%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 18 tgtctgcctgtctacacttgctgtgcagaacttcc-tgcacctgtacagcaggcacagac 76
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 26 tgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacagac 85
Query: 77 aggcag 82
||||||
Sbjct: 86 aggcag 91
>29245_hsa-mir-3120:mirbase
Length = 81
Score = 91.7 bits (46), Expect = 9e-20
Identities = 62/66 (93%), Gaps = 1/66 (1%)
Strand = Plus / Minus
Query: 18 tgtctgcctgtctacacttgctgtgcagaacttcc-tgcacctgtacagcaggcacagac 76
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 75 tgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacagac 16
Query: 77 aggcag 82
||||||
Sbjct: 15 aggcag 10
>29246_hsa-mir-3120:mirbase
Length = 81
Score = 91.7 bits (46), Expect = 9e-20
Identities = 62/66 (93%), Gaps = 1/66 (1%)
Strand = Plus / Minus
Query: 18 tgtctgcctgtctacacttgctgtgcagaacttcc-tgcacctgtacagcaggcacagac 76
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 75 tgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacagac 16
Query: 77 aggcag 82
||||||
Sbjct: 15 aggcag 10
>30118_ppa-mir-214:mirbase
Length = 110
Score = 91.7 bits (46), Expect = 9e-20
Identities = 62/66 (93%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 18 tgtctgcctgtctacacttgctgtgcagaacttcc-tgcacctgtacagcaggcacagac 76
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 26 tgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacagac 85
Query: 77 aggcag 82
||||||
Sbjct: 86 aggcag 91
>30289_ptr-mir-214:mirbase
Length = 110
Score = 91.7 bits (46), Expect = 9e-20
Identities = 62/66 (93%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 18 tgtctgcctgtctacacttgctgtgcagaacttcc-tgcacctgtacagcaggcacagac 76
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 26 tgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacagac 85
Query: 77 aggcag 82
||||||
Sbjct: 86 aggcag 91
>30907_ppy-mir-214:mirbase
Length = 110
Score = 91.7 bits (46), Expect = 9e-20
Identities = 62/66 (93%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 18 tgtctgcctgtctacacttgctgtgcagaacttcc-tgcacctgtacagcaggcacagac 76
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 26 tgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacagac 85
Query: 77 aggcag 82
||||||
Sbjct: 86 aggcag 91
>31941_mmu-mir-214:mirbase
Length = 110
Score = 91.7 bits (46), Expect = 9e-20
Identities = 62/66 (93%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 18 tgtctgcctgtctacacttgctgtgcagaacttcc-tgcacctgtacagcaggcacagac 76
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 26 tgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacagac 85
Query: 77 aggcag 82
||||||
Sbjct: 86 aggcag 91
>32804_rno-mir-214:mirbase
Length = 110
Score = 91.7 bits (46), Expect = 9e-20
Identities = 62/66 (93%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 18 tgtctgcctgtctacacttgctgtgcagaacttcc-tgcacctgtacagcaggcacagac 76
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 26 tgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacagac 85
Query: 77 aggcag 82
||||||
Sbjct: 86 aggcag 91
>33026_rno-mir-3120:mirbase
Length = 117
Score = 91.7 bits (46), Expect = 9e-20
Identities = 62/66 (93%), Gaps = 1/66 (1%)
Strand = Plus / Minus
Query: 18 tgtctgcctgtctacacttgctgtgcagaacttcc-tgcacctgtacagcaggcacagac 76
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 96 tgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacagac 37
Query: 77 aggcag 82
||||||
Sbjct: 36 aggcag 31
>33290_bta-mir-214:mirbase
Length = 110
Score = 91.7 bits (46), Expect = 9e-20
Identities = 62/66 (93%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 18 tgtctgcctgtctacacttgctgtgcagaacttcc-tgcacctgtacagcaggcacagac 76
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 26 tgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacagac 85
Query: 77 aggcag 82
||||||
Sbjct: 86 aggcag 91
>34039_ssc-mir-214:mirbase
Length = 110
Score = 91.7 bits (46), Expect = 9e-20
Identities = 62/66 (93%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 18 tgtctgcctgtctacacttgctgtgcagaacttcc-tgcacctgtacagcaggcacagac 76
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 26 tgtctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacagac 85
Query: 77 aggcag 82
||||||
Sbjct: 86 aggcag 91
>27097_eca-mir-214:mirbase
Length = 65
Score = 87.7 bits (44), Expect = 1e-18
Identities = 60/64 (93%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 20 tctgcctgtctacacttgctgtgcagaacttcc-tgcacctgtacagcaggcacagacag 78
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 1 tctgcctgtctacacttgctgtgcagaacatccgctcacctgtacagcaggcacagacag 60
Query: 79 gcag 82
||||
Sbjct: 61 gcag 64
>26001_gga-mir-214:mirbase
Length = 110
Score = 52.0 bits (26), Expect = 8e-08
Identities = 57/66 (86%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 18 tgtctgcctgtctacacttgctgtgcagaacttcc-tgcacctgtacagcaggcacagac 76
|||||| ||||||||||||||||| || ||| ||| |||||||||||| || ||||||
Sbjct: 26 tgtctgtctgtctacacttgctgtccataacatccactcacctgtacagcgggaacagac 85
Query: 77 aggcag 82
||||||
Sbjct: 86 aggcag 91
