miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01413;miR-430;BX088538.26/194476-194390 7955:Danio rerio
(zebrafish)
Length = 87
Score = 145 bits (73), Expect = 8e-35
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1 attaagatcacttcaaacaggagcattgatttgtcctttgttcataagtgcttctctttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 attaagatcacttcaaacaggagcattgatttgtcctttgttcataagtgcttctctttg 72
Query: 61 gggtagttttaat 73
|||||||||||||
Sbjct: 73 gggtagttttaat 85
>RF01413;miR-430;AANH01007362.1/9227-9139 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 89
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 40 gttcataagtgcttctctttggggt 64
|||||||||||||||||||||||||
Sbjct: 54 gttcataagtgcttctctttggggt 78
>RF01413;miR-430;AANH01014757.1/10280-10366 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 87
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 40 gttcataagtgcttctctttggggt 64
|||||||||||||||||||||||||
Sbjct: 52 gttcataagtgcttctctttggggt 76
>RF01413;miR-430;AANH01007365.1/1370-1284 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 87
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 40 gttcataagtgcttctctttggggt 64
|||||||||||||||||||||||||
Sbjct: 52 gttcataagtgcttctctttggggt 76
>RF01413;miR-430;ACDA01001276.1/768-686 321403:Nothobranchius
kuhntae (Beira killifish)
Length = 83
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 42 tcataagtgcttctctttggggt 64
|||||||||||||||||||||||
Sbjct: 50 tcataagtgcttctctttggggt 72
>RF01413;miR-430;CAAE01012407.1/38942-38853 99883:Tetraodon
nigroviridis
Length = 90
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 39 tgttcataagtgcttctctttggggt 64
|||||| |||||||||||||||||||
Sbjct: 53 tgttcaaaagtgcttctctttggggt 78
>RF01413;miR-430;CAAE01012407.1/36632-36545 99883:Tetraodon
nigroviridis
Length = 88
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 39 tgttcataagtgcttctctttggggt 64
|||||| |||||||||||||||||||
Sbjct: 51 tgttcaaaagtgcttctctttggggt 76
>RF01413;miR-430;CAAB01008374.1/5335-5248 31033:Takifugu rubripes
Length = 88
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 39 tgttcataagtgcttctctttggggt 64
|||||| |||||||||||||||||||
Sbjct: 51 tgttcaaaagtgcttctctttggggt 76
>RF01413;miR-430;AF420486.1/390-476 13106:Lepomis macrochirus
(bluegill)
Length = 87
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 39 tgttcataagtgcttctctttggggt 64
|||||||||||||||||| |||||||
Sbjct: 51 tgttcataagtgcttctccttggggt 76
>RF01413;miR-430;AY064509.1/830-920 13106:Lepomis macrochirus
(bluegill)
Length = 91
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 43 cataagtgcttctctttggggt 64
||||||||||||||||||||||
Sbjct: 59 cataagtgcttctctttggggt 80
