miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01413;miR-430;CAAK05053789.1/566-477 7955:Danio rerio
(zebrafish)
Length = 90
Score = 145 bits (73), Expect = 1e-34
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 1 gtctctatcggtaccctcacaaaagcactgactttgatgctgtatttggtaagtgctatt 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 10 gtctctatcggtaccctcacaaaaacactgactttgatgctgtatttggtaagtgctatt 69
Query: 61 tgttggcgtagtttcaagtga 81
|||||| ||||||||||||||
Sbjct: 70 tgttggggtagtttcaagtga 90
>RF01413;miR-430;CAAK05031383.1/3185-3096 7955:Danio rerio
(zebrafish)
Length = 90
Score = 105 bits (53), Expect = 8e-23
Identities = 71/77 (92%)
Strand = Plus / Plus
Query: 5 ctatcggtaccctcacaaaagcactgactttgatgctgtatttggtaagtgctatttgtt 64
|||||||| |||||||||| |||||||||| ||||||| || ||||||||||||||||||
Sbjct: 14 ctatcggtgccctcacaaaggcactgacttggatgctgcatgtggtaagtgctatttgtt 73
Query: 65 ggcgtagtttcaagtga 81
|| ||||||||||||||
Sbjct: 74 ggggtagtttcaagtga 90
>RF01413;miR-430;BX088538.26/195245-195151 7955:Danio rerio
(zebrafish)
Length = 95
Score = 63.9 bits (32), Expect = 3e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 46 ttggtaagtgctatttgttggcgtagtttcaagtga 81
||||||||||||||||||||| ||||||||||||||
Sbjct: 60 ttggtaagtgctatttgttggggtagtttcaagtga 95
>RF01413;miR-430;CAAB01008374.1/4796-4707 31033:Takifugu rubripes
Length = 90
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 48 ggtaagtgctatttgttggcgtagttt 74
||||||||||||||||||| |||||||
Sbjct: 59 ggtaagtgctatttgttggggtagttt 85
